Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h10f
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58332| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07) 30 1.7
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45) 29 4.0
SB_49169| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_49167| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_15766| Best HMM Match : Cor1 (HMM E-Value=5.2) 28 7.0
SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_58332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 157 PYTMSVRIEKITEPLTLGEGPHWDERQQALYFVSIQDKTIH 279
P +SV ++ + E L EGPHWDE L ++ K +H
Sbjct: 4 PVKVSVLLKNVGE---LCEGPHWDEASGKLVWMDCMQKLVH 41
>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 31.1 bits (67), Expect = 0.75
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Frame = +1
Query: 283 YVPTTEKHTKTSLDGRVGFILPVEGTTD-QFV---VGVER-KFLFIQWDGEDGSKVAVLK 447
Y+ + + H ++ G+ G I+ V TT+ FV V ++R +++ QW G D +
Sbjct: 308 YLKSAKIHN-VNVRGKRGNIVQVFPTTEYDFVPNTVTMKRNEYVHFQWTGSDTNPANNAG 366
Query: 448 ELGEVDKDRPNNRINDGKADPRGRLFAGTMGH 543
E G+ DR N + +GKA P G T GH
Sbjct: 367 E-GKAGTDRHNVLLLEGKAYPVGVSRPFTYGH 397
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +1
Query: 283 YVPTTEKHTKTSLDGRVGFILPVEGTTD-QFV---VGVER-KFLFIQWDGEDGSKVAVLK 447
Y+ + + H ++ G+ G I+ V TT+ FV V ++R +++ QW G D +
Sbjct: 930 YLKSAKIHN-VNVRGKRGNIVQVFPTTEYDFVPNSVTMKRNEYVHFQWTGSDTNPADNAG 988
Query: 448 ELGEVDKDRPNNRINDGKADPRGRLFAGTMGH 543
E G+ DR N + +GKA P T GH
Sbjct: 989 E-GKAGTDRHNVLLLEGKAYPEAVSRPFTYGH 1019
>SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)
Length = 194
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +3
Query: 300 KTYKNQFRWE----GWFHITSGRYNRPICSGSRTQVPFHT 407
K Y F W G FHI S I + +RT++PFHT
Sbjct: 82 KKYYPYFEWPPFCYGLFHILSADVVPEILNHTRTRIPFHT 121
>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +3
Query: 300 KTYKNQFRWE----GWFHITSGRYNRPICSGSRTQVPFHT 407
K Y F W G FHI S I + +RT++PFHT
Sbjct: 932 KKYYPYFEWPPFCYGLFHILSADVVPEILNHTRTRIPFHT 971
>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
Length = 454
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/86 (20%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 214 GPHWDERQQALYFVSIQDKTIHKYVPTTEKHTKTSLDGRVGFILPVEGTTDQF-VVGVER 390
GP WD+ ++++ + + + +Y+PT + + L+ R+ + +G ++ VV +E
Sbjct: 73 GPDWDKYRESIKSQVTRPRELAEYIPTFNQISDELLE-RLNSLRTPKGRNYEYEVVNLEE 131
Query: 391 KFLFIQWDGEDGSKVAVLKELGEVDK 468
+ I+W E + + G ++K
Sbjct: 132 E--LIKWSFETATYAMFNQRFGYMEK 155
>SB_49169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 514 GRLFAGTMGHEDPPGNFERNKASLYKLDSAK 606
G L +GHE+ PG E+ KA+L ++ + +
Sbjct: 36 GSLEDEVLGHEEDPGMMEKKKAALKRMGARR 66
>SB_49167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 514 GRLFAGTMGHEDPPGNFERNKASLYKLDSAK 606
G L +GHE+ PG E+ KA+L ++ + +
Sbjct: 36 GSLEDEVLGHEEDPGMMEKKKAALKRMGARR 66
>SB_15766| Best HMM Match : Cor1 (HMM E-Value=5.2)
Length = 249
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 349 VEGTTDQFVVGVERKFLF--IQWDGEDGSKVAVLKELGEVDKDRPN 480
V+G T V+G E + ++ WDG+ VLK+ GE + R N
Sbjct: 47 VQGATLLTVIGEEAQDVYSTFNWDGDINKIEPVLKKFGEYCEPRRN 92
>SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 263 WMLTKY-SAC*RSSQWGPSPSVRGSVIFSILTDIVYGFLTKQ 141
WML + S +S Q S S+ S + S L IVYG LTKQ
Sbjct: 152 WMLLDFGSKDEKSLQMLFSMSIILSAVHSCLNPIVYGTLTKQ 193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,375,716
Number of Sequences: 59808
Number of extensions: 405908
Number of successful extensions: 882
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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