Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h10f
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41272-6|AAA82450.2|  331|Caenorhabditis elegans Serpentine rece...    30   1.2  
AF038606-6|AAB92023.2|  464|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U41272-6|AAA82450.2|  331|Caenorhabditis elegans Serpentine
           receptor, class u protein48 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 230 SSQWGPSPSVRGSVIFSILTDIVYGFLTKQSVISLLAYYTLLNL 99
           S  WG   S+  S++FSI+  IVY   T+ +  S   +YT + L
Sbjct: 116 SQMWGTYWSMFSSLLFSIIRMIVYVTPTRHAEWSSYVFYTFIPL 159


>AF038606-6|AAB92023.2|  464|Caenorhabditis elegans Hypothetical
           protein C04C3.2 protein.
          Length = 464

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 197 GSVI-FSILTDIVYGFLTKQSVISLLAYYTLL 105
           GS++  ++L DIV G + K   I LL YY +L
Sbjct: 286 GSLLAMTVLLDIVAGAMPKSDAIPLLGYYIML 317


>Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical
           protein F01G4.5 protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 317 LVFVCFSVVGTYLCIVLSWMLTKYSAC*RSSQWGPSPSVRGSVI 186
           L F CF    T LC +  + LT   +  R  +W P    + +VI
Sbjct: 141 LHFNCFDAYATKLCYLCYYTLTVLWSLVRGKKWNPLRERKDTVI 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,029
Number of Sequences: 27780
Number of extensions: 306791
Number of successful extensions: 659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)