Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h09r
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   4.9  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    25   8.5  

>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 580 YLFQDRFTVDILRYTGRRLRVRITIRFE 497
           ++F+D +  +I+RY+   L+ R+ IRF+
Sbjct: 440 HIFEDSYA-EIMRYSAHDLKKRLMIRFD 466


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 336 IPNIT*LHFSIIQLIHSKKLS 398
           I N+  LH+ I QL+H K LS
Sbjct: 412 ITNVLWLHYLIHQLLHKKNLS 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,607
Number of Sequences: 5004
Number of extensions: 55470
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)