Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h09r
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.2  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 329 PILLLENVCLINFYLKSTAV*KVAL 255
           P +L+  +C++ FYL + A  KV L
Sbjct: 243 PTVLISFLCVLVFYLPAEAGEKVTL 267


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 233 ISWKPSSFD 207
           +SWKPS FD
Sbjct: 104 LSWKPSDFD 112


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 330 PNSTVRKCLLNKFLSKIYSSLKSGTFSNDSLT 235
           PNS VRKC     +S I  S  SG+ S ++L+
Sbjct: 584 PNSAVRKC-----MSPINGSGASGSGSAENLS 610


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,802
Number of Sequences: 438
Number of extensions: 4603
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)