Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h08f
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0310 - 8842286-8843314 32 0.30
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 31 0.91
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 29 3.7
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 29 3.7
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685... 28 4.8
02_04_0260 - 21350060-21350269,21350544-21350604,21350834-213509... 28 4.8
06_03_1269 + 28865236-28865819,28866124-28866754 28 6.4
11_04_0385 - 17022367-17022597,17022738-17022797,17022912-170229... 27 8.5
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 27 8.5
08_02_0707 - 20212190-20214592 27 8.5
02_04_0346 - 22183145-22183264,22183877-22183966,22184140-221842... 27 8.5
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 27 8.5
>02_02_0310 - 8842286-8843314
Length = 342
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 400 NHHLHNDDHQQEDCVRDDHAVTLAYRSTA-SQERDHEHYSPDDYEDPRTDSKM 245
+HH H+D++++++ + D A R + + R H H+ DD+E + M
Sbjct: 193 HHHHHHDENEEDEHEQADEASPAVERLISFHRRRHHHHHHEDDHEQREEGAPM 245
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 30.7 bits (66), Expect = 0.91
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 430 ALAVGEEEDANHHLHNDDHQQEDC 359
++++ E D + H HN++H+ EDC
Sbjct: 969 SISIEESSDHHEHHHNEEHKAEDC 992
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 415 EEEDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPRT-DSKMG 242
EEE A +LH ++ED V DD E D +HY+ + R+ + +MG
Sbjct: 205 EEEKARGYLHPHHLKEEDEVDDDDDEREEEMHCGGWEDDDDHYASTTTSETRSEEGEMG 263
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 433 DALAVGEEEDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDD 275
DA G E+A H H C RDD V + +S+ +D++ DD
Sbjct: 1209 DAKNCGSGEEAGDHDSERTHGTLPCSRDDEPVHVPSDFGSSKSQDNQRDEDDD 1261
>10_06_0171 +
11466934-11466990,11467073-11468312,11468450-11468596,
11469650-11470140
Length = 644
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 433 DALAVGEEEDANHHLHNDDHQQEDCVRDDHAV 338
D + EE+D +HH H+ H D +HA+
Sbjct: 320 DTFRIAEEDDDDHHHHHHYHGDADDDDGEHAM 351
>02_04_0260 -
21350060-21350269,21350544-21350604,21350834-21350901,
21351274-21351483,21351684-21351724,21351923-21351972,
21352084-21352172,21352265-21352339,21352539-21352656,
21352689-21352771,21352854-21352970,21353857-21354074,
21354184-21354241,21354356-21354508
Length = 516
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 318 QHPKNAITNITAPTTMKIHGPTARWVFSKSLTMVQFIRNATPIP 187
QH +N I MK H P +W+ L+ Q I++ P
Sbjct: 187 QHWENKIQASDENGMMKEHSPLGKWIIGMKLSGPQMIKHVQEFP 230
>06_03_1269 + 28865236-28865819,28866124-28866754
Length = 404
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 277 RRGCNVRDRVLGMLWSDTRESLHGRHVRN 363
RR C+V D V +W ++HGR R+
Sbjct: 214 RRRCSVFDVVTAAIWQCRTRAIHGRRCRS 242
>11_04_0385 -
17022367-17022597,17022738-17022797,17022912-17022997,
17023056-17023218,17023540-17023598,17023693-17023798,
17023927-17023993,17024109-17024222,17024664-17025077,
17025799-17025887
Length = 462
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = -2
Query: 315 HPKNAITNITAPTTMKIHGPTARWVFSKSLTMVQFIR 205
HP+ A+ + AP + P W ++ + T+ F++
Sbjct: 294 HPQRAVVLVQAPGQARTDAPVQLWYYTSTRTVPVFVQ 330
>10_08_0943 + 21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 64 KCLL*NRNKK*CSQHGMWNEFCEICAILLQPGRRAPRPAASGDWSSVPDE 213
KCL N + S+ + ++F C L++ R A RPA S + +P +
Sbjct: 927 KCLSVNPRCRITSEDALMHDFFAPCHDLIRQHRLARRPAPSNNLPCLPQD 976
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.5 bits (58), Expect = 8.5
Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 23/168 (13%)
Frame = -1
Query: 577 LAVVDSASVTAAFELSLQFREDSLGGLVCVSVRSLF----------E*HADAIHNALLDA 428
L +V + V +FE L+ RE S L+ VS+ L E H A + +
Sbjct: 440 LVLVGALIVLESFERILEPREISTSSLLTVSIGGLVVNVIGLVFFHEEHHHAHGGSCSHS 499
Query: 427 LAVGEEEDANH-HLHNDDHQQEDCVRDDHAV--------TLAYRSTASQERDHEHY---- 287
+ +H H H+ H ED DHA+ + A++ H+H+
Sbjct: 500 HSHSHSHSHSHSHSHSHVHGHEDHHNHDHALQGVNHNGACCEHHGDANKSHHHDHHHDSS 559
Query: 286 SPDDYEDPRTDSKMGLQ*VFDHGPVHQERYSNPH*QQAEERDDQVEEE 143
+ + + + T++ HG H + + H + ++ D ++
Sbjct: 560 NEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSEHHQQSGDHAHQD 607
>02_04_0346 -
22183145-22183264,22183877-22183966,22184140-22184220,
22184430-22184589,22184723-22184787,22185370-22185441,
22186163-22186327
Length = 250
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Frame = +1
Query: 97 CSQHGMWNEFCEICAILLQPGRRAPRPA---------ASGDWSSVPDELD-HGQRL 234
C++ G + CEIC + +PG AP +SGDWS + LD H R+
Sbjct: 66 CNEKG--DIICEICHVSYKPGYTAPPQVHHDETTIEISSGDWSISGNRLDLHDPRI 119
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 400 NHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDYED 266
+HH DD E +DD + + S + R H H S D E+
Sbjct: 823 HHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSEN 867
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,828
Number of Sequences: 37544
Number of extensions: 295114
Number of successful extensions: 1043
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -