Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h08f
(592 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g04620.1 68415.m00470 cation efflux family protein potential ... 33 0.14
At1g32400.2 68414.m03998 senescence-associated family protein co... 31 0.57
At1g32400.1 68414.m03997 senescence-associated family protein co... 31 0.57
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 31 0.76
At1g15730.1 68414.m01887 PRLI-interacting factor L, putative str... 30 1.0
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At3g13960.1 68416.m01762 expressed protein identical to transcri... 29 2.3
At2g20100.1 68415.m02348 ethylene-responsive family protein simi... 29 2.3
At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein le... 29 3.1
At1g55600.1 68414.m06364 WRKY family transcription factor simila... 28 4.1
At5g61330.1 68418.m07696 rRNA processing protein-related contain... 28 5.4
At5g47920.1 68418.m05919 expressed protein similar to unknown pr... 28 5.4
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 27 9.4
At1g07050.1 68414.m00751 CONSTANS-like protein-related contains ... 27 9.4
At1g03270.1 68414.m00305 expressed protein contains Pfam profile... 27 9.4
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = -1
Query: 463 HADAIHNALLDALAVGEEEDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYS 284
H H+ D+ E + +HH H+ H+ E+C +H S +E +H H
Sbjct: 577 HKHEEHHQHSDSHKHEEHHEHDHHHHSHSHKHEEC-NHNHDHEHQSHSHNHEECNHNHDH 635
Query: 283 PDDYEDPRTDSK 248
D++ +++ K
Sbjct: 636 HSDHQPEKSEKK 647
Score = 30.7 bits (66), Expect = 0.76
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = -1
Query: 409 EDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYS-PDDYEDPRTDSKMGLQ* 233
++ HH H+D H+ E + H + +++ E DH H+S +E+ + Q
Sbjct: 566 KNEEHHQHSDSHKHE----EHHQHSDSHKHEEHHEHDHHHHSHSHKHEECNHNHDHEHQ- 620
Query: 232 VFDHGPVHQE-RYSNPH*QQAEERDDQVEEE*HIFH 128
H H+E +++ H + + +E HI H
Sbjct: 621 --SHSHNHEECNHNHDHHSDHQPEKSEKKEHRHIDH 654
>At1g32400.2 68414.m03998 senescence-associated family protein
contains Pfam profile PF00335: Tetraspanin family
Length = 280
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 263 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 361
++FI +G +FVI+ GC G S C + Y+
Sbjct: 83 YLFIGIGVALFVISCCGCVGTCSRSVCCLSCYS 115
>At1g32400.1 68414.m03997 senescence-associated family protein
contains Pfam profile PF00335: Tetraspanin family
Length = 280
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 263 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 361
++FI +G +FVI+ GC G S C + Y+
Sbjct: 83 YLFIGIGVALFVISCCGCVGTCSRSVCCLSCYS 115
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = -1
Query: 424 AVGEEEDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPRTDS 251
+V E++ +HH H+ DH + DH DH H+S D DP S
Sbjct: 302 SVNEDDKGDHHDHDHDHHHDHNHDHDH--------HHHDGHDHHHHSHDHTHDPGVSS 351
>At1g15730.1 68414.m01887 PRLI-interacting factor L, putative strong
similarity to PRLI-interacting factor L GI:11139268 from
[Arabidopsis thaliana]; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 448
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -1
Query: 424 AVGEEEDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHE-HYSPDDYEDPRTDS 251
+V EEE + H+D H DC DH + E +HE H+S D DP S
Sbjct: 305 SVNEEEKEDREGHDDHHHGHDC--HDH------HNEHEHEHEHEHHHSHDHTHDPGVGS 355
>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 237
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 341 SDSRVSLHSIPRTRSRTLQPRRL 273
S S V + S+PRTRS + PRRL
Sbjct: 78 SSSTVDISSMPRTRSSRMSPRRL 100
>At3g13960.1 68416.m01762 expressed protein identical to
transcription activator GRL5 [Arabidopsis thaliana]
GI:21539888 (unpublished); supporting cDNA
gi|21539887|gb|AY102638.1|
Length = 397
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Frame = -1
Query: 463 HADAIHNALLDALAVGEEEDANHHLHND-DHQQEDC-VRDDHAVTLAYRSTASQERDHEH 290
H HN + D ++ HLH+D DH+Q+ C V RS + +
Sbjct: 291 HCSTDHNKI-DHHHTYSSSSSSQHLHHDHDHRQQQCFVLGADMFNKPTRSVLANSSRQDQ 349
Query: 289 YSPDDYEDPRTDSKMGLQ*VF 227
+D +D SK L F
Sbjct: 350 NQEEDEKDSSESSKKSLHHFF 370
>At2g20100.1 68415.m02348 ethylene-responsive family protein similar
to Ethylene-regulated ER33 protein (GI:5669656)
[Lycopersicon esculentum]; PMID: 12679534; putative
bHLH133 transcription factor
Length = 362
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 454 AIHNALLDALAVGEEEDA---NHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERD 299
++ LL L +GEEE NHH H + HQ R + R AS +++
Sbjct: 94 SLSQLLLGGLMMGEEEKMEMMNHHHHQNQHQSYQAKRIQNWEEQVLRHQASMKQE 148
>At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein
leucine zipper-containing protein - Lycopersicon
esculentum, EMBL:Z12127 contains Pfam domain PF03081:
Exo70 exocyst complex subunit;
Length = 653
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -1
Query: 418 GEEEDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEH 290
G AN N DH+ ED H+ L + SQ EH
Sbjct: 5 GNHHHANESSENHDHKSEDHENKQHSDELHSSTPESQSESSEH 47
>At1g55600.1 68414.m06364 WRKY family transcription factor similar
to SPF1 protein GI:484261 from [Ipomoea batatas];
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 485
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -1
Query: 460 ADAIHNALLDALAV--GEEEDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHY 287
++ + +A D +++ E ED N ++D Q ED D + +E+D ++
Sbjct: 204 SELVDDAHTDIISIEDSESEDGNKDDDDEDFQYEDEDEDQYDQDQDVDEDEEEEKDEDNV 263
Query: 286 SPDDYEDP 263
+ DD + P
Sbjct: 264 ALDDPQPP 271
>At5g61330.1 68418.m07696 rRNA processing protein-related contains
weak similarity to rRNA processing protein EBP2
(EBNA1-binding protein homolog) (Swiss-Prot:P36049)
[Saccharomyces cerevisiae]
Length = 436
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = -1
Query: 421 VGEEEDANHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPRTDSK 248
+ ++E+ N+D Q D + DD ++ S+E D DD D D +
Sbjct: 20 ISDQENLKAESDNEDDQLPDGIEDDEVDSMEDDEGESEEDDEGDTEEDDEGDSEEDDE 77
>At5g47920.1 68418.m05919 expressed protein similar to unknown
protein (emb|CAB67623.1)
Length = 187
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = -1
Query: 397 HHL--HNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPR 260
HHL H D D +D + + Y S AS HE Y + E +
Sbjct: 58 HHLLGHADQDDDNDQDQDKNKAIVLYNSKASTMAHHEEYDVHEEESDK 105
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 27.1 bits (57), Expect = 9.4
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = -1
Query: 328 YRSTASQERDHEHYSPDDYEDPRTDSK 248
+ A +++++E+Y P D ++P++D K
Sbjct: 83 FSDEAPKKKNYENYFPKDKQEPKSDQK 109
>At1g07050.1 68414.m00751 CONSTANS-like protein-related contains
similarity to photoperiod sensitivity quantitative trait
locus (Hd1) GI:11094203 from [Oryza sativa]; similar to
Zinc finger protein constans-like 15 (SP:Q9FHH8)
{Arabidopsis thaliana}
Length = 195
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -1
Query: 373 QQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDYE 269
++E+ +DH ++ + S RD ++S DD+E
Sbjct: 8 KKEEEEEEDHLLSSTFESINGHSRDQHNHSIDDFE 42
>At1g03270.1 68414.m00305 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 499
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 260 PWIFIVVGAVMFVIAFLG 313
PW F+VVG F++ F G
Sbjct: 31 PWWFVVVGVACFLVLFAG 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,296,514
Number of Sequences: 28952
Number of extensions: 223705
Number of successful extensions: 799
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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