Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h07r
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    29   0.75 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   3.0  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    27   4.0  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    26   5.3  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   9.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.2  

>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 336 EGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMY 199
           E   R+D+PP         A+   P P    P+G +Y+   P P Y
Sbjct: 232 ERRSRFDQPPSKRMALTSTARESVPAPLPSPPSGPIYTYTYPKPAY 277


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 748 RVRAYADRGTSGSSNSRASQLDI*RRRHIRGARSHQRTRAAW 623
           RV A A    S SS ++A  +    R H R  R H      W
Sbjct: 292 RVSARASSSASSSSRTQAKSIPSHERTHYRLIRQHPELEHVW 333


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 777 VTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGGVISVE 655
           + +C +MN  GFV ++    A   +       F G  I VE
Sbjct: 30  ILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVE 70


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 158 REITMYHNTCNLHWDG 111
           RE+    NTCNL W+G
Sbjct: 482 RELNYTENTCNLVWEG 497


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = -1

Query: 309 PYDDRHYDERAQYERPRPAHHIPNGDM----YSRRSPAPMYSGRGGPAPVA 169
           PY+D   D R+   R R     P+G      Y RRSP         P+PV+
Sbjct: 128 PYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDRRSPK---RNHRSPSPVS 175


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -1

Query: 318 DEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPM----YSGRGGPAPVAGGYERD 151
           D+  YD   YD++  Y+R +PA    N +   +     M    Y+G   P  V   Y  D
Sbjct: 20  DQYAYDSEVYDDQNAYQR-QPADAYSNEEFLDQADYDSMYGEGYNGYDYPTGVTESY-GD 77

Query: 150 HYVP 139
            Y P
Sbjct: 78  EYTP 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,755
Number of Sequences: 5004
Number of extensions: 60595
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)