Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h07r
(780 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 33 0.34
SB_6122| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-26) 32 0.45
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 30 1.8
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 30 1.8
SB_59430| Best HMM Match : Extensin_2 (HMM E-Value=7.9) 30 2.4
SB_43197| Best HMM Match : HTH_psq (HMM E-Value=6.9) 30 2.4
SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 29 3.2
SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3) 29 3.2
SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52) 29 3.2
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0) 29 4.2
SB_7620| Best HMM Match : Remorin_N (HMM E-Value=5.2) 29 4.2
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 5.6
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_26602| Best HMM Match : SNF (HMM E-Value=0) 29 5.6
SB_43700| Best HMM Match : SRCR (HMM E-Value=0) 28 7.4
SB_8542| Best HMM Match : PT (HMM E-Value=4) 28 7.4
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_52226| Best HMM Match : Cytadhesin_P30 (HMM E-Value=9) 28 9.8
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035) 28 9.8
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 28 9.8
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 32.7 bits (71), Expect = 0.34
Identities = 58/220 (26%), Positives = 70/220 (31%), Gaps = 2/220 (0%)
Frame = -1
Query: 777 VTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGGVISVEXXXXXXXXXXXXXXXXXXX 598
V C + GFV +TE+ A A+ H NG I V
Sbjct: 73 VLGCSLHANFGFVQFETEKGADEAVAKEHGRIINGKKIDVRIVNSRADVNLVGERKRRSG 132
Query: 597 XXXXXXXXXXGPVRHAPPPRDAPYMRDRPGPVRGYERGPPAAPYDERYA--YGEDRRGFA 424
P RH PP R+ P R P G + G +R + DR
Sbjct: 133 P----------PDRHTPPDRNGPPDRHGPPDRHGMDHGRGRGRGRDRLSPPPHRDRGRPG 182
Query: 423 LMDRGPRDXXXXXXXXXPDERYQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHI 244
DR PR P ERY +S RR D PY D HYD RP
Sbjct: 183 YDDRPPR-------FDHPHERYGRPLS---PPRRGD--PYLD-HYD--------RPLDPY 221
Query: 243 PNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYVPQYMQP 124
P + Y P GR P Y+R+ P P
Sbjct: 222 PPRERYRDEPPPRDAYGRHDLPPPRDPYDRERRDPYERDP 261
>SB_6122| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-26)
Length = 363
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 164 VTREITMYHNTCNLHWDGNGWPDEIVSVHQLWQWTRTLMIQCTLEDSNLLRRNR 3
+TR + + H+ N WD GWP +I+ +L +TR + I +++ L NR
Sbjct: 83 LTRSVYILHSESNA-WDIQGWPGDILC--KLAAFTRDITISVSIQSMVFLALNR 133
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 31.1 bits (67), Expect = 1.0
Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 3/123 (2%)
Frame = -1
Query: 564 PVRHAPPPRDAPYMRDRPGPVRGYE---RGPPAAPYDERYAYGEDRRGFALMDRGPRDXX 394
P + P D GP RG++ RGPP D G+ G+ RG
Sbjct: 769 PYDNRGKPGDVRRRSPPSGPSRGFQDRDRGPPGRGRDAPPGRGQ---GYTNRGRGQPGNR 825
Query: 393 XXXXXXXPDERYQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRS 214
D R + S GTR PYDDR R P P + R S
Sbjct: 826 YRDQGAPWDRRPERDNSRDRGTR-----PYDDRDRRPRDASPPPGPGYREQRSWDGRRGS 880
Query: 213 PAP 205
P P
Sbjct: 881 PPP 883
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 360 SVRQGKQAPA-VRKRP*GRDPSARIHAGPRRTHSAHHRAPPADRVRSRAPDPAGPS 524
S RQ Q+P V+ P R S H PRR +RA + R +SR+P+ A S
Sbjct: 370 SQRQRSQSPQRVQASPRRRSQSPD-HVSPRRKSQTPNRASTSTRQQSRSPNRASTS 424
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 564 PVRHAPPPRDAPYMRDRPGPVRGYERGPPAAPYDERYAYGEDRRGFALMDRGPR 403
P H PP R + R P R + GPP P+ +R + + R DRGPR
Sbjct: 282 PDMHGPPDRGR-HDRGPPHDHRDFH-GPPDGPHGQRMQHHDIRGPDPRGDRGPR 333
>SB_59430| Best HMM Match : Extensin_2 (HMM E-Value=7.9)
Length = 442
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -1
Query: 312 PPYDDRHYDERAQYERPRPAHHIPN-GDMYSRRSPAPMYSGRG 187
PPYD R Y R P P + Y SP P Y RG
Sbjct: 168 PPYDTRGYSYRYPMHSPLPPYDTRGYSYRYPMHSPLPPYDTRG 210
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -1
Query: 312 PPYDDRHYDERAQYERPRPAHHIPN-GDMYSRRSPAPMYSGRG 187
PPYD R Y R P P + Y SP P Y RG
Sbjct: 150 PPYDIRGYSYRYPMHSPLPPYDTRGYSYRYPMHSPLPPYDTRG 192
>SB_43197| Best HMM Match : HTH_psq (HMM E-Value=6.9)
Length = 204
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 303 HREAHRNVAYPPPLRCDSGSV-RQGKQAPAVRKRP*GRDPSARIHAGPRRTHSAHHRAPP 479
H++ R+ A PPP + + V ++ K+APAV ++P P R H+ HH+ P
Sbjct: 52 HKKVCRDPAPPPPPKGEKYFVLKKPKEAPAVLRKP------------PTRPHTTHHKPRP 99
>SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 339 VEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYS-RRSPA 208
V+G + YD P YD H + P + P D +S R+PA
Sbjct: 386 VDGYQTYDNPTYDTEHETHAEAHVNGYPTYDNPTCDTHSPARAPA 430
>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 1043
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/68 (29%), Positives = 24/68 (35%)
Frame = -1
Query: 324 RYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHY 145
R +E RH E Q + P H M RR P +G P PV + R Y
Sbjct: 779 RQNERSSPQRH--EEGQQQLPGGNHSPGQHHMQQRREALPEQHRQGRPIPVMRQHPRQDY 836
Query: 144 VPQYMQPP 121
P P
Sbjct: 837 SPMLQAMP 844
>SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)
Length = 169
Score = 29.5 bits (63), Expect = 3.2
Identities = 34/121 (28%), Positives = 41/121 (33%)
Frame = -1
Query: 558 RHAPPPRDAPYMRDRPGPVRGYERGPPAAPYDERYAYGEDRRGFALMDRGPRDXXXXXXX 379
R PP D P RP P Y+ PP+ + R +R R P D
Sbjct: 35 RPRPPYDDRPPSESRPRPP--YDERPPS---ESRPRPPYERPPSESRPRPPYDDRRTSET 89
Query: 378 XXPDERYQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMY 199
+ +S +PPYDDR R RPRP P D P P Y
Sbjct: 90 RPRPPYDERRVS-----ENRPKPPYDDR----RTSETRPRP----PYDDRDLSHGPPPRY 136
Query: 198 S 196
S
Sbjct: 137 S 137
>SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52)
Length = 460
Score = 29.5 bits (63), Expect = 3.2
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Frame = +3
Query: 297 GRHREAHRNVAYPPPLRCDSGSVR-QGKQAP-AVRKRP*GRDPSARIHAGP--RRTH--- 455
GRHR AHR P +C + + K P R +P D S RI P RTH
Sbjct: 14 GRHRCAHRPETRGPTHKCLFTEYQDRYKDHPFGERTKPIKPDRSVRISDAPLEDRTHYRL 73
Query: 456 --SAHHRAPPADRVRSRAPDPAG 518
+H APP R + R P G
Sbjct: 74 DYISHKYAPPKKREKDRWIKPDG 96
>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
Length = 1243
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/77 (22%), Positives = 31/77 (40%)
Frame = -1
Query: 534 APYMRDRPGPVRGYERGPPAAPYDERYAYGEDRRGFALMDRGPRDXXXXXXXXXPDERYQ 355
AP RD+ P+ G G P+ ++ R +A +++ P R +
Sbjct: 720 APQSRDQAMPLYGGPSGSPSPRFEGPQMQSLSREAYAAINKNP---VSALNEYAQKNRME 776
Query: 354 NHISVVEGTRRYDEPPY 304
VV+ R ++ PP+
Sbjct: 777 VAFEVVKDGRNFNRPPF 793
>SB_7620| Best HMM Match : Remorin_N (HMM E-Value=5.2)
Length = 330
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 540 RDAPYMRDRPGPVRG--YERGPPAAPYDERYAYGEDRR 433
RDAPY R RPG +G + G P E A G D +
Sbjct: 274 RDAPYPRFRPGTAKGVSWRSGTRHTPRRESVALGLDSK 311
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 336 EGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 172
EG ++ D+ ++ H + + PAH +P G + + P+P S P+PV
Sbjct: 634 EGEKK-DDHFHNGSHKSGSRKRKSSNPAHAVPQGQRHIQAVPSPPDSYSEQPSPV 687
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/96 (26%), Positives = 37/96 (38%)
Frame = -3
Query: 763 YNEPVRVRAYADRGTSGSSNSRASQLDI*RRRHIRGARSHQRTRAAWGRSRWTRFHARWH 584
+N+P R R G+ S SR S R R G+R +R + S +R +R
Sbjct: 620 FNDPTRGRHIFKPGSLRRSRSRTSLSSRSRSRDRGGSRRGKRRSRSRSSSYSSRSRSRSR 679
Query: 583 GXXXXXXXXXXXXASGRTIHEGPAGSGARLRTRSAG 476
S + H + S +R R+RS G
Sbjct: 680 SRDRGRGRKRSRRRSRSSSHSSSSLSRSRSRSRSRG 715
>SB_26602| Best HMM Match : SNF (HMM E-Value=0)
Length = 721
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 540 RDAPYMRDRPGPVRGYERGPPAAPYDERYAY 448
R P D PV GY RG P +P+D+R Y
Sbjct: 51 RGKPSPFDDRAPVLGYHRGKP-SPFDDRAPY 80
>SB_43700| Best HMM Match : SRCR (HMM E-Value=0)
Length = 967
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = -3
Query: 235 GHVQPTITCPYVFRAWRSSSCGRRLRERSLCTTIHATSIGTAMVGRMRL 89
G + CP FR W S CG +C + G+ GR+ +
Sbjct: 265 GRERDIFQCP--FRGWHSHDCGHHEDAGVICQYVRLMGGGSPQAGRVEI 311
>SB_8542| Best HMM Match : PT (HMM E-Value=4)
Length = 650
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = -1
Query: 243 PNGDMYSRRSPAPMYSGRGGPAP---VAGGYERDHYVPQYMQPPLGRQW 106
P Y +P P Y G P P + G + +Y+P QP R W
Sbjct: 372 PQSRYYPSGNPQPRYYPSGNPQPRYYLPGNPQPRYYLPGNPQPRYYRSW 420
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -2
Query: 713 QQQFARFTTRHLTAASYP-WSAVASKNAGSVGAVAVDEVPCAVAWSGAEAAPCDTRPRLG 537
++ A T AA+ P SAVA +N + V ++EVP V E+ D
Sbjct: 339 KRSLAPDTLEEYVAATEPSQSAVAEENKDTQNDVPIEEVPTIVEPEPVESEAKDEDKEKA 398
Query: 536 THHT*GTGRVRCAA 495
T GTG+ A+
Sbjct: 399 PEATEGTGQAVSAS 412
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = -1
Query: 327 RRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAP 175
RR D DR D + R R D Y RSP+P +G PAP
Sbjct: 438 RRRDRSRSRDRSRDRDRRRHRDRSRERGGGRDRYRERSPSPRRAG-APPAP 487
>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 28.3 bits (60), Expect = 7.4
Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 4/126 (3%)
Frame = -1
Query: 543 PRDAPYMRDRPGP-VRGYERGPPAAPYDERYAYGE---DRRGFALMDRGPRDXXXXXXXX 376
PR Y+ PG R RGP + E + G R G+A D GPR
Sbjct: 234 PRTPSYV---PGDEYRSPRRGPGSQSSVEDHRPGRGYGSRGGYASADEGPRTPITNGMSG 290
Query: 375 XPDERYQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYS 196
+ Y + G R PP+ R + +H +P G +++++ P P
Sbjct: 291 YMSDSYAH------GPRT---PPHSVRSEPGYVRSAVATTSHSLPRGPVHAKKGPPPPTL 341
Query: 195 GRGGPA 178
+ G A
Sbjct: 342 PKRGTA 347
>SB_52226| Best HMM Match : Cytadhesin_P30 (HMM E-Value=9)
Length = 264
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 546 PPRDAPYMRDRPGPVRGYERGPP-AAPYDERYAYGEDRRG 430
PP + P R PG +GY++ P D+ Y Y R G
Sbjct: 180 PPTNNPMFRPFPGNPQGYQQPTTNQLPTDQAYRYRRPRGG 219
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = -1
Query: 309 PYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYS-GRGGPAPVAGGYERDHYVPQY 133
P DR A P P P + R+P P G GP+P + H P
Sbjct: 438 PSFDREGQRGASMGHPIPPQTRP----FDNRAPPPTQGYGPSGPSPWNMQHPPQHRAPPG 493
Query: 132 MQPPLG 115
PPLG
Sbjct: 494 QYPPLG 499
>SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035)
Length = 582
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 465 HRAPPADRVRSRAPDPAGPSCMV 533
+RAPP R + P+ +GP CM+
Sbjct: 18 YRAPPRGRRDLKVPEVSGPYCMI 40
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 692 TTRHLTAASYPWSAVASKNAGSVGAVAVDEVPCAVAWSGAEAA 564
+T H T + W A +AGS G VA + P + SG E A
Sbjct: 3930 STDHTTGTANGWYAYTDASAGSPGDVAPLKTP-RIGMSGPECA 3971
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,647,055
Number of Sequences: 59808
Number of extensions: 596919
Number of successful extensions: 1947
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1930
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -