Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h07r
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 35 0.057
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 32 0.53
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 32 0.53
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 32 0.53
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 32 0.53
U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog (hedg... 31 0.92
Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical... 30 1.6
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 30 1.6
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 30 2.1
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 30 2.1
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 30 2.1
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 30 2.1
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 2.8
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 29 2.8
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 29 2.8
Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical p... 29 3.7
AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase... 29 3.7
U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 28 6.5
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 28 6.5
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 28 8.6
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 28 8.6
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 28 8.6
Z46787-10|CAA86749.1| 154|Caenorhabditis elegans Hypothetical p... 28 8.6
U70844-6|AAQ91891.1| 119|Caenorhabditis elegans Hypothetical pr... 28 8.6
U70844-5|AAB09096.2| 148|Caenorhabditis elegans Hypothetical pr... 28 8.6
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 28 8.6
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 28 8.6
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 28 8.6
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 35.1 bits (77), Expect = 0.057
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Frame = +3
Query: 300 RHREAHRNVAYPPPLRCDSGSVRQGKQAPA---------VRKRP*GRDPSARIHAGPRRT 452
R RE R + PP R S R+ ++P R+R R P R + PRR
Sbjct: 79 RKREPIRAPSASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQ 138
Query: 453 HSAHHRAPPADRVRSRAPDPA 515
S PP + RSR+P PA
Sbjct: 139 VSRSRSPPPRRQQRSRSPPPA 159
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.53
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 777 VTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGGVISVE 655
VTECDI+ FVH++ E+ I L T +G V++++
Sbjct: 29 VTECDIVKNYAFVHIE-EDDVDPIITRLTGYTIDGKVVNIK 68
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 31.9 bits (69), Expect = 0.53
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 228 TCPR*VCGEQVSGVHTVRARRSGGRHREAHRNVAYPPPLRCDSG 359
TCP + E+ SG+H + G RH++ R +AYP D G
Sbjct: 150 TCP--ILSEKWSGIHVSGDQLKGQRHKQEDRFLAYPNGQYMDRG 191
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 31.9 bits (69), Expect = 0.53
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 228 TCPR*VCGEQVSGVHTVRARRSGGRHREAHRNVAYPPPLRCDSG 359
TCP + E+ SG+H + G RH++ R +AYP D G
Sbjct: 150 TCP--ILSEKWSGIHVSGDQLKGQRHKQEDRFLAYPNGQYMDRG 191
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.53
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 777 VTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGGVISVE 655
VTECDI+ FVH++ E+ I L T +G V++++
Sbjct: 29 VTECDIVKNYAFVHIE-EDDVDPIITRLTGYTIDGKVVNIK 68
>U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 9 protein.
Length = 588
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -1
Query: 315 EPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYVPQ 136
+PP + + R Y+ P P++ Y ++ PAP + P P Y + P
Sbjct: 171 QPPPAAKWGNNRPSYQNPTPSYQ----QGYPQQFPAPQRQQQYQPQPQTTNYNQAPQRPL 226
Query: 135 YMQPP 121
Y+ PP
Sbjct: 227 YIPPP 231
>Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Frame = +3
Query: 279 RARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSARIHAGPRRTHS 458
R R RE R+ PPP R S APA R R PS + RR +
Sbjct: 251 REIRDSREPREVRRS---PPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSVRRESA 307
Query: 459 A--HHRAPPADRVRSRAPDPA 515
+ RA R RA PA
Sbjct: 308 SPPRRRARIIPRYECRAQKPA 328
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Frame = +3
Query: 279 RARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSARIHAGPRRTHS 458
R R RE R+ PPP R S APA R R PS + RR +
Sbjct: 251 REIRDSREPREVRRS---PPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSVRRESA 307
Query: 459 A--HHRAPPADRVRSRAPDPA 515
+ RA R RA PA
Sbjct: 308 SPPRRRARIIPRYECRAQKPA 328
>AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Frame = +3
Query: 279 RARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSARIHAGPRRTHS 458
R R RE R+ PPP R S APA R R PS + RR +
Sbjct: 251 REIRDSREPREVRRS---PPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSVRRESA 307
Query: 459 A--HHRAPPADRVRSRAPDPA 515
+ RA R RA PA
Sbjct: 308 SPPRRRARIIPRYECRAQKPA 328
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Frame = +3
Query: 279 RARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSARIHAGPRRTHS 458
R R RE R+ PPP R S APA R R PS + RR +
Sbjct: 251 REIRDSREPREVRRS---PPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSVRRESA 307
Query: 459 A--HHRAPPADRVRSRAPDPA 515
+ RA R RA PA
Sbjct: 308 SPPRRRARIIPRYECRAQKPA 328
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = -1
Query: 777 VTECDIMN------RCGFVHMQTEEQAAAAIRALHNSTFNG 673
+T C++M GFV E+A A++ALH+ST G
Sbjct: 239 ITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEG 279
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = -1
Query: 777 VTECDIMN------RCGFVHMQTEEQAAAAIRALHNSTFNG 673
+T C++M GFV E+A A++ALH+ST G
Sbjct: 179 ITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEG 219
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = -1
Query: 777 VTECDIMN------RCGFVHMQTEEQAAAAIRALHNSTFNG 673
+T C++M GFV E+A A++ALH+ST G
Sbjct: 176 ITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEG 216
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = -1
Query: 777 VTECDIMN------RCGFVHMQTEEQAAAAIRALHNSTFNG 673
+T C++M GFV E+A A++ALH+ST G
Sbjct: 239 ITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEG 279
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.5 bits (63), Expect = 2.8
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Frame = +3
Query: 300 RHREAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*G---------RDPSA--RIHAGPR 446
R R + P P R S S + QAP R+ P G R P+A R P+
Sbjct: 438 RRRRSPSQSKSPAPRRRRSPS--KSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQ 495
Query: 447 RTHSAHHRAPPADRVRSRAPDP 512
R S R P+ RSR+P P
Sbjct: 496 RRRSPRRRRSPSSSSRSRSPPP 517
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -1
Query: 357 QNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPA 178
Q +S EG+ + +H D Q P P + P RR+ + Y RGGP
Sbjct: 800 QRRLSKFEGSIQNLRAATSTQHLDSMQQLHFPMPDYEPPQPPQQRRRTESSGY--RGGPP 857
Query: 177 P 175
P
Sbjct: 858 P 858
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Frame = +3
Query: 294 GGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDP--SARIHAGPRRTHSAHH 467
GGR R R + P R D + +P R+RP P R +G R+ A
Sbjct: 61 GGRSRSPIRRGSPPRGARADRDRPMRPSPSPPRRRRPSPSPPRRDRRDRSGSRQRRRASP 120
Query: 468 RAPPADRVRSRA 503
R PA R S A
Sbjct: 121 RRSPAARSASPA 132
>Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical
protein T04A11.6 protein.
Length = 988
Score = 29.1 bits (62), Expect = 3.7
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Frame = -1
Query: 315 EPPYDDRHYDERAQYERPRPAHHIPNGDMYSRR-SPAPMYSGRGGPAPVAGGYERDHY-V 142
E Y D +DE E P + I + S P Y P P + YE HY
Sbjct: 50 EEEYIDNGHDE----EPPVEVNRIQESTSFDEPVSSPPRYRPSENPGPSSSSYEPGHYSF 105
Query: 141 PQYMQPPLGRQW------LAG*DCERPSVVAMDQDSYDSMH 37
+Y Q P Q + D E P +V +D DS+D+ H
Sbjct: 106 NEYQQFPSRPQKRLVDPPIVDLD-EEPPIVDLD-DSFDNFH 144
>AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase
protein.
Length = 988
Score = 29.1 bits (62), Expect = 3.7
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Frame = -1
Query: 315 EPPYDDRHYDERAQYERPRPAHHIPNGDMYSRR-SPAPMYSGRGGPAPVAGGYERDHY-V 142
E Y D +DE E P + I + S P Y P P + YE HY
Sbjct: 50 EEEYIDNGHDE----EPPVEVNRIQESTSFDEPVSSPPRYRPSENPGPSSSSYEPGHYSF 105
Query: 141 PQYMQPPLGRQW------LAG*DCERPSVVAMDQDSYDSMH 37
+Y Q P Q + D E P +V +D DS+D+ H
Sbjct: 106 NEYQQFPSRPQKRLVDPPIVDLD-EEPPIVDLD-DSFDNFH 144
>U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical
protein T26A8.4 protein.
Length = 574
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 318 DEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGG 184
+E P+ D Y + R P+H +GD + RS P Y GRGG
Sbjct: 111 EEEPFSDTDYRVNRR-RRLSPSHD--DGD-FDPRSKRPYYGGRGG 151
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -1
Query: 363 RYQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGG 184
R+Q+ G R+ P+ ++ +D+R P + P G +S RSP YS
Sbjct: 171 RHQSPEGSRYGHRQRSISPFRNQQFDQRNSRRDNYPRNQSPRGSRHS-RSPINQYSDERN 229
Query: 183 PAP 175
+P
Sbjct: 230 RSP 232
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 777 VTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGGVISV 658
V +C + + GFV T A I + T NG +ISV
Sbjct: 123 VVQCHVADGYGFVLFDTRANAQKKIVEMDGKTLNGKLISV 162
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +1
Query: 682 CRVVKRANCCCRLFLCLHMHEPAPV--HYITLCDD 780
C V CR +C H +P P+ H LC D
Sbjct: 759 CSCVTGGQTVCRQMVCPHCDDPVPIEGHCCPLCKD 793
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +1
Query: 682 CRVVKRANCCCRLFLCLHMHEPAPV--HYITLCDD 780
C V CR +C H +P P+ H LC D
Sbjct: 693 CSCVTGGQTVCRQMVCPHCDDPVPIEGHCCPLCKD 727
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +1
Query: 682 CRVVKRANCCCRLFLCLHMHEPAPV--HYITLCDD 780
C V CR +C H +P P+ H LC D
Sbjct: 759 CSCVTGGQTVCRQMVCPHCDDPVPIEGHCCPLCKD 793
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +1
Query: 682 CRVVKRANCCCRLFLCLHMHEPAPV--HYITLCDD 780
C V CR +C H +P P+ H LC D
Sbjct: 693 CSCVTGGQTVCRQMVCPHCDDPVPIEGHCCPLCKD 727
>Z46787-10|CAA86749.1| 154|Caenorhabditis elegans Hypothetical
protein C16C10.11 protein.
Length = 154
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +3
Query: 390 VRKRP*GRDPSARIHAGPRRTHSAHHRAPPADRVRSRAP---DPAGPSCMVRP 539
VR+R PSA + + PR + APP R + AP PA P+ M P
Sbjct: 2 VRRRTASPSPSAPVRSAPRPAAQSSFAAPP-PRPAAAAPAYHPPAAPTPMGAP 53
>U70844-6|AAQ91891.1| 119|Caenorhabditis elegans Hypothetical
protein ZK154.6b protein.
Length = 119
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 279 RARRSGGRHREAHRNVAYP--PPL 344
RARR+G R R N+AYP PPL
Sbjct: 92 RARRAGRRPRNETDNIAYPSAPPL 115
>U70844-5|AAB09096.2| 148|Caenorhabditis elegans Hypothetical
protein ZK154.6a protein.
Length = 148
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 279 RARRSGGRHREAHRNVAYP--PPL 344
RARR+G R R N+AYP PPL
Sbjct: 121 RARRAGRRPRNETDNIAYPSAPPL 144
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +1
Query: 682 CRVVKRANCCCRLFLCLHMHEPAPV--HYITLCDD 780
C V CR +C H +P P+ H LC D
Sbjct: 693 CSCVTGGQTVCRQMVCPHCDDPVPIEGHCCPLCKD 727
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +1
Query: 682 CRVVKRANCCCRLFLCLHMHEPAPV--HYITLCDD 780
C V CR +C H +P P+ H LC D
Sbjct: 693 CSCVTGGQTVCRQMVCPHCDDPVPIEGHCCPLCKD 727
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform a protein.
Length = 1256
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 318 DEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYS 196
++P + H DE Q E+P P + + + +R P+P+ S
Sbjct: 414 EQPNFRSYHNDEPTQ-EQPNPRYQRSSSNFMQQRDPSPVRS 453
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,918,502
Number of Sequences: 27780
Number of extensions: 407364
Number of successful extensions: 1411
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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