Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h07r
(780 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 34 0.092
At1g21310.1 68414.m02662 proline-rich extensin-like family prote... 32 0.37
At5g67070.1 68418.m08457 rapid alkalinization factor (RALF) fami... 31 0.65
At1g31550.1 68414.m03871 GDSL-motif lipase, putative similar to ... 30 1.5
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 3.5
At3g54580.1 68416.m06039 proline-rich extensin-like family prote... 29 4.6
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 29 4.6
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 29 4.6
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 29 4.6
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 28 6.0
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 28 6.0
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 28 6.0
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 28 6.0
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 28 6.0
At2g40475.1 68415.m04995 expressed protein 28 6.0
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 28 8.0
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 28 8.0
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 28 8.0
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 28 8.0
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 34.3 bits (75), Expect = 0.092
Identities = 33/149 (22%), Positives = 49/149 (32%), Gaps = 6/149 (4%)
Frame = -1
Query: 549 PPPRDAPYMRDRPGPVRGYERGPPAAPYDERYAYGEDRRGFALMDRGPRDXXXXXXXXXP 370
PPP P P P GP +PY Y++ + P++
Sbjct: 234 PPPSSYPSNDHLPPPT-----GPSDSPYPHPYSHQPYHQDPPKHMPPPQNYSSHEPSPNS 288
Query: 369 DERYQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGR 190
+Q++ S E + P Y + + Y P A P+ +S P P YS
Sbjct: 289 LPNFQSYPSFSESSLPSTSPHYPSHYQNPEPYYSSPHSAP-APSSTSFSSAPPPPPYSSN 347
Query: 189 G----GPA--PVAGGYERDHYVPQYMQPP 121
G P P ++ HY Y P
Sbjct: 348 GRINIAPVLDPAPSSAQKYHYDSSYQPGP 376
>At1g21310.1 68414.m02662 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 431
Score = 32.3 bits (70), Expect = 0.37
Identities = 38/157 (24%), Positives = 53/157 (33%), Gaps = 9/157 (5%)
Frame = -1
Query: 564 PVRHAPPPRDAPYM-RDRPGPVRGYERGP---PAAPYDERYAYGEDRRGFALMDRGPRDX 397
PV H+PPP Y+ + P PV+ Y P P + Y Y + P
Sbjct: 276 PVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPP--PVKHYSPPPV 333
Query: 396 XXXXXXXXPDERYQNHISVVEGTRR---YDEPPYDDRHYDERAQYERPRPA--HHIPNGD 232
Y++ V+ Y PP +HY Y+ P P H+ P
Sbjct: 334 YHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHY----VYKSPPPPVKHYSPPPV 389
Query: 231 MYSRRSPAPMYSGRGGPAPVAGGYERDHYVPQYMQPP 121
+S P Y + P P Y H+ Y PP
Sbjct: 390 YHSPPPPKEKYVYKSPPPPPVHHYSPPHHPYLYKSPP 426
Score = 31.1 bits (67), Expect = 0.86
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = -1
Query: 321 YDEPPYDDRHYDERAQYERPRPAHHIPNGDM--YSRRSPAPMYSGRGGPAPV--AGGYER 154
Y PP +HY ++ P P +H P Y +SP P P PV + +
Sbjct: 31 YSSPPPPVKHYTPPVKHYSPPPVYHSPPPPKKHYEYKSPPPPVK-HYSPPPVYHSPPPPK 89
Query: 153 DHYVPQYMQPPL 118
HYV + PP+
Sbjct: 90 KHYVYKSPPPPV 101
>At5g67070.1 68418.m08457 rapid alkalinization factor (RALF) family
protein similar to RALF precursor [Nicotiana tabacum]
GI:16566316
Length = 129
Score = 31.5 bits (68), Expect = 0.65
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -1
Query: 360 YQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGR 190
+ + +++G ++ DD D R+ Y R R ++I G + + R P P SGR
Sbjct: 45 HSDEFDIIDGEESFEVTEEDDGVTDRRSLYWR-RTKYYISYGALSANRVPCPPRSGR 100
>At1g31550.1 68414.m03871 GDSL-motif lipase, putative similar to
lipase [Arabidopsis thaliana] GI:1145627; contains
InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L
family
Length = 391
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 698 RFTTRHLTAA---SYPWSAVASKNAGSVGAVAVDEVPCAVAWSG 576
RF RHL+A P++ S++ GSVG A + VAW G
Sbjct: 300 RFINRHLSACCGVGGPYNFNLSRSCGSVGVEACSDPSKYVAWDG 343
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 555 HAPPPRDAPYMRDRPGPVRGYERGPPAAP 469
H+PPP Y P P E PP AP
Sbjct: 680 HSPPPSPVHYSSPPPPPSAPCEESPPPAP 708
>At3g54580.1 68416.m06039 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 951
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = -1
Query: 273 YERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHY---VPQYMQP 124
Y P P H+ P+ +Y +SP P Y P P + HY P Y P
Sbjct: 719 YSSPPPPHYSPSPKVY-YKSPPPPYVYSSPPPPYYSPSPKVHYKSPPPPYYAP 770
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = -1
Query: 321 YDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHY 145
Y PP + Y+ P P ++ P ++ +SP P Y P P + HY
Sbjct: 744 YSSPPPPYYSPSPKVHYKSPPPPYYAPTPKVH-YKSPPPPYVYSSPPPPYYSPSPKVHY 801
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 285 ERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYVPQYMQPP 121
++ + +R + G S SP P GRG +PV+GG R+ + Q + P
Sbjct: 2102 KKKRKDREKSGPKTRTGGSSSPVSPPPAMIGRGLRSPVSGGVPRETRLAQQQRWP 2156
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 285 ERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYVPQYMQPP 121
++ + +R + G S SP P GRG +PV+GG R+ + Q + P
Sbjct: 2101 KKKRKDREKSGPKTRTGGSSSPVSPPPAMIGRGLRSPVSGGVPRETRLAQQQRWP 2155
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/87 (26%), Positives = 30/87 (34%)
Frame = +3
Query: 246 CGEQVSGVHTVRARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSA 425
CGE R+R G R + PP R + +P R P P
Sbjct: 101 CGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPP----PPR 156
Query: 426 RIHAGPRRTHSAHHRAPPADRVRSRAP 506
R PR + + R+PP R R P
Sbjct: 157 RRSPSPRGRN--YSRSPPPYRARDEVP 181
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 750 CGFVHMQTEEQAAAAIRALHNS-TFNGGVISVE 655
C FV T + A AIRALHN T GG V+
Sbjct: 163 CCFVKYATSKDADRAIRALHNQITLPGGTGPVQ 195
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 750 CGFVHMQTEEQAAAAIRALHNS-TFNGGVISVE 655
C FV T + A AIRALHN T GG V+
Sbjct: 163 CCFVKYATSKDADRAIRALHNQITLPGGTGPVQ 195
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 777 VTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGGVISVE 655
VT I FV +T+E A A+ A S V+SVE
Sbjct: 120 VTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVE 160
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = -1
Query: 309 PYDDR-HYDERAQYERPRPAHHIPNGDM---YSRRSPAPMYSGRGGPAP 175
P D R Y R+ PR P G+ YSRRS +P Y G AP
Sbjct: 169 PSDSRSRYRSRSYSPAPRRRGGPPRGEEDENYSRRSYSPGYEGAAAAAP 217
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -1
Query: 747 GFVHMQTEEQAAAAIRALHNSTFNGGVISV 658
GFV +EE AAI AL+NS G I V
Sbjct: 221 GFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
>At2g40475.1 68415.m04995 expressed protein
Length = 193
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/44 (25%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -2
Query: 755 TGAGSCICRQRNKRQQQFAR-FTTRHLTAASYPWSAVASKNAGS 627
+ +G+ + + R +Q +F + +RH++ S+ WS+ +S ++ S
Sbjct: 75 SSSGNKLSKARTIKQTRFVKTLLSRHVSRPSFSWSSASSSSSSS 118
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 444 RRTHSAHHRAPPADRVRSRAPDPA 515
RR++S R+PP R RS +P PA
Sbjct: 143 RRSYSPRARSPPPPRRRSPSPPPA 166
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -1
Query: 243 PNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYVPQYMQPP 121
P M P + G AP GG H P YMQPP
Sbjct: 369 PTRQMDHMPPPHQSWGPPQGHAPSVGGGGYGHNPPPYMQPP 409
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 744 FVHMQTEEQAAAAIRALHNSTFNGGVISVE 655
FV T+E A A+ + HNS V+SVE
Sbjct: 107 FVQFATQEDATKALDSTHNSKLLDKVVSVE 136
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 744 FVHMQTEEQAAAAIRALHNSTFNGGVISVE 655
FV T+E A A+ + HNS V+SVE
Sbjct: 133 FVQFATQEDATKALDSTHNSKLLDKVVSVE 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,104,861
Number of Sequences: 28952
Number of extensions: 386403
Number of successful extensions: 1429
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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