Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h07f
(596 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 45 5e-05
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 43 2e-04
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 42 3e-04
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.057
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 34 0.10
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 34 0.10
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 33 0.18
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 33 0.18
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 33 0.23
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.71
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 30 1.2
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 30 1.2
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 30 1.2
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 29 2.2
SB_7620| Best HMM Match : Remorin_N (HMM E-Value=5.2) 29 2.9
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 29 2.9
SB_26602| Best HMM Match : SNF (HMM E-Value=0) 29 3.8
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 28 5.0
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_52226| Best HMM Match : Cytadhesin_P30 (HMM E-Value=9) 28 6.6
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 28 6.6
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035) 28 6.6
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 28 6.6
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 27 8.7
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 27 8.7
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_19711| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 44.8 bits (101), Expect = 5e-05
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 1/124 (0%)
Frame = +3
Query: 132 KVFVGSLPQGS-KPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 308
++F+G+L +DL ++F R G V C + GFV +TE+ A A+ H N
Sbjct: 47 RIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHANFGFVQFETEKGADEAVAKEHGRIIN 106
Query: 309 GGVISVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRHAPPPRDAPYMRDRPGPVRG 488
G I V P RH PP R+ P R P G
Sbjct: 107 GKKIDVR----------IVNSRADVNLVGERKRRSGPPDRHTPPDRNGPPDRHGPPDRHG 156
Query: 489 YERG 500
+ G
Sbjct: 157 MDHG 160
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 426 RHAPPPRDAPYMRDRPGPVRGYERGPPAAPY--DERYAYGEDRR 551
R PPPRDA D P P Y+R PY D Y + +D R
Sbjct: 228 RDEPPPRDAYGRHDLPPPRDPYDR-ERRDPYERDPYYDHRDDPR 270
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 129 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 308
T++FVG L + +K DL +F +G + CD+ GF+ + A A+R +N
Sbjct: 6 TQLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTAYGFIEYEDPRDAEEAMRRENNRKLF 65
Query: 309 GGVISVE 329
G I VE
Sbjct: 66 GSRIVVE 72
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 132 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG------FVHMQTEEQAAAAIRALH 293
+V+VG+LPQ + +DL +F ++G + + D+ NR G FV + A A++
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRD 321
Query: 294 NSTFNGGVISVE 329
F+G I VE
Sbjct: 322 GHEFDGYRIRVE 333
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +3
Query: 132 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNG 311
+V++G LP G+ +D+R+ F +G + + ++ N GFV + + A A+ + G
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFVEFEDDRDADDAVYECNGKEMLG 63
Query: 312 GVISVE 329
I VE
Sbjct: 64 ERILVE 69
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 135 VFVGSLPQGSKPEDLRKLFERFGVVT--ECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 308
+FV LPQ + P L KLF +G +T E + GFV+M E+A AI L+ + +
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFVNMSNYEEACHAICCLNGTPQH 333
Query: 309 G 311
G
Sbjct: 334 G 334
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = +3
Query: 126 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECD-IMNRC-------GFVHMQTEEQAAAAI 281
+T + + +P ED++K+F G VT C I +R FV+ + A A+
Sbjct: 26 RTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAV 85
Query: 282 RALHNSTFNGGVISV 326
R ++ + + V
Sbjct: 86 REMNGARLQNKTLKV 100
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 36.3 bits (80), Expect = 0.019
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +3
Query: 135 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-NRC------GFVHMQTEEQAAAAIRALH 293
+FV +LP +K ++ +LF + GVV + ++ NR G+V + E A+ A+ L
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 294 NSTFNGGVISV 326
+ G ISV
Sbjct: 233 KTEVKGRTISV 243
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 135 VFVGSLPQGSKPEDLRKLFERFGVVTECDI 224
+FVG+L G +DLR FE+FGVV + DI
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDI 268
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +3
Query: 135 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIRAL 290
++V ++P+ + RK FE +G + C ++ CGFV + +A AAI +L
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSL 194
Query: 291 HNSTFNGGVISVE 329
+ F G + ++
Sbjct: 195 SGTFFPGSTMGLQ 207
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Frame = +3
Query: 126 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAI 281
+T + V +PQ + R +FE + C I+ GFV T E A AI
Sbjct: 46 KTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAI 105
Query: 282 RALHNSTFNGGVISV 326
L+ T V+ V
Sbjct: 106 DKLNGFTIGNKVLKV 120
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +3
Query: 123 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCG---FVHMQTEEQAAAA 278
P ++V ++ + E + LF + G+V + DIM +C FV M T+E+A A
Sbjct: 273 PGCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNA 332
Query: 279 IRALH 293
I+ L+
Sbjct: 333 IQTLN 337
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +3
Query: 129 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDI-MNRCGFVHMQTEE--QAAAAIRALHNS 299
TK++VG+L + + +L + FE+FG +++ + N GF ++ E+ A A+R L +
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGA 63
Query: 300 TFNGGVISVE 329
I VE
Sbjct: 64 NVCDRTIRVE 73
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +3
Query: 129 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIR 284
TK+FVG +P S + LRK F +FG + E ++ GFV M T + A A +
Sbjct: 10 TKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACK 69
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +3
Query: 132 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 287
K+++G+L S ++ + FE FG V + DI+ GFV +Q+ +Q A AI
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEK 68
Query: 288 LHNSTFNGGVISV 326
++ S+ G I+V
Sbjct: 69 MNQSSVGGRNITV 81
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 132 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 227
K+FVG + + +K EDLR +F FG + E ++
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVL 246
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 132 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 227
K+FVG +P+ + +DLR +FE +G + E I+
Sbjct: 171 KLFVGQVPRTWEEKDLRPIFEPYGQIYELTIL 202
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 33.1 bits (72), Expect = 0.18
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 132 KVFVGSLPQGSKPEDLRKLFERFGVVTE 215
+VF+G+LP G K D+ ++F ++G + E
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTILE 385
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 126 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 227
++ V+VG+LP DL K+FER+G V + I+
Sbjct: 9 KSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTIL 42
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 117 MVPQTK-VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALH 293
MV TK +F+G L + ED++K F +FG V+ C + +++ AA + ++H
Sbjct: 178 MVTTTKKIFIGGLSTNTSEEDMKKYFSQFGKVS-------CEYETEDVKDELAAVLISVH 230
Query: 294 NS 299
++
Sbjct: 231 SN 232
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 105 KSVIMVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTE 215
K + VP+ K+FVG LP+ + + L + F +FG VT+
Sbjct: 192 KEELNVPK-KLFVGRLPESTTEKTLMEYFAQFGEVTD 227
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +3
Query: 117 MVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHN 296
M T+V+ G LP+ + DL K +G V E + GFV A + L+
Sbjct: 1 MSRSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKLGYGFVEFDDYRDADDCVYDLNG 60
Query: 297 STFNG 311
G
Sbjct: 61 RNLLG 65
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 135 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM 227
VFVG L G+ E L+ FE+FG V IM
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIM 112
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 30.7 bits (66), Expect = 0.93
Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 1/131 (0%)
Frame = +2
Query: 119 GAANKGVRRQPAAGLQTG-GPKKAV*AFXXXXXXXYNEPVRVRAYADRGTSGSSNSRASQ 295
G ++G R G G G + A +N+P R R G+ S SR S
Sbjct: 585 GRGDRGTLRGALRGTFRGRGRGRGFQAIRGARGRGFNDPTRGRHIFKPGSLRRSRSRTSL 644
Query: 296 LDI*RRRHIRGARSHQRTRAAWGRSRWTRFHARWHGXXXXXXXXXXXXXSGRTIHEGPAG 475
R R G+R +R + S +R +R S + H +
Sbjct: 645 SSRSRSRDRGGSRRGKRRSRSRSSSYSSRSRSRSRSRDRGRGRKRSRRRSRSSSHSSSSL 704
Query: 476 SGARLRTRSAG 508
S +R R+RS G
Sbjct: 705 SRSRSRSRSRG 715
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 420 PVRHAPPPRDAPYMRDRPGPVRGYERGPPAAPYDERYAYGEDRRGFALMDRGPR 581
P H PP R + R P R + GPP P+ +R + + R DRGPR
Sbjct: 282 PDMHGPPDRGR-HDRGPPHDHRDFH-GPPDGPHGQRMQHHDIRGPDPRGDRGPR 333
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 420 PVRHAPPPRDAPYMRDRPGPVRGYERGPPAAPYDERYAYGEDRRGFALMDRGPRDAYAP 596
P++ PP ++ +PGP ++GPP P+ +GE R RGP D + P
Sbjct: 216 PLQGGPPQGES---HGQPGPPALLQQGPPGPPF-----HGEPRPPPHHDMRGPPDQWVP 266
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 117 MVPQTK-VFVGSLPQGSKPEDLRKLFERFGVVTECDIM 227
MV +T+ ++VG+LP+ + ED+ K F R+G V I+
Sbjct: 1 MVRETRHLWVGNLPENIREEDIVKHFTRYGRVESVKIL 38
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 135 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG 239
+FVG++ + + DL++ FER+G V + DI + G
Sbjct: 251 LFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPG 285
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 114 IMVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 227
I P +FV L + EDL +F RFG + C+++
Sbjct: 115 IKPPDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVI 152
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 129 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGF 242
T V+VG+LP K +L+++F ++G + E + G+
Sbjct: 615 TTVYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGY 652
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 132 KVFVGSLPQGSKPEDLRKLFERFGVV 209
KVF+G L G+ EDL++ F +G+V
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMV 228
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Frame = +3
Query: 135 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIRAL 290
+++G +P G +++K FE+FG V + FV +E A A +
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTM 159
Query: 291 HNSTFNGGVI 320
HN G ++
Sbjct: 160 HNYMMFGRLL 169
>SB_7620| Best HMM Match : Remorin_N (HMM E-Value=5.2)
Length = 330
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 444 RDAPYMRDRPGPVRG--YERGPPAAPYDERYAYGEDRR 551
RDAPY R RPG +G + G P E A G D +
Sbjct: 274 RDAPYPRFRPGTAKGVSWRSGTRHTPRRESVALGLDSK 311
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Frame = +3
Query: 117 MVPQTKVFVGSLPQGSKPEDLRKLFERFG------VVTECDIMNRC---GFVHMQTEEQA 269
++ +T +FV +LP + + FE G +V + D NRC G+V EE A
Sbjct: 16 VISKTTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDA 75
Query: 270 AAA 278
A
Sbjct: 76 LKA 78
>SB_26602| Best HMM Match : SNF (HMM E-Value=0)
Length = 721
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 444 RDAPYMRDRPGPVRGYERGPPAAPYDERYAY 536
R P D PV GY RG P +P+D+R Y
Sbjct: 51 RGKPSPFDDRAPVLGYHRGKP-SPFDDRAPY 80
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = +3
Query: 126 QTKVFVGSLPQGSKPEDLRKLFERFGVV--------TECDIMNRCGFVHMQTEEQAAAAI 281
Q VF+G+LP + E LR+LF G V + I G+V ++++ A+
Sbjct: 55 QRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFAL 114
Query: 282 RALHNSTFNGGVISV 326
+ ++N+ F G I V
Sbjct: 115 K-MNNAEFKGRKIRV 128
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 271 QQQFARFTTRHLTAASYP-WSAVASKNAGSVGAVAVDEVPCAVAWSGAEAAPCDTRPRLG 447
++ A T AA+ P SAVA +N + V ++EVP V E+ D
Sbjct: 339 KRSLAPDTLEEYVAATEPSQSAVAEENKDTQNDVPIEEVPTIVEPEPVESEAKDEDKEKA 398
Query: 448 THHT*GTGRVRCAA 489
T GTG+ A+
Sbjct: 399 PEATEGTGQAVSAS 412
>SB_52226| Best HMM Match : Cytadhesin_P30 (HMM E-Value=9)
Length = 264
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 438 PPRDAPYMRDRPGPVRGYERGPP-AAPYDERYAYGEDRRG 554
PP + P R PG +GY++ P D+ Y Y R G
Sbjct: 180 PPTNNPMFRPFPGNPQGYQQPTTNQLPTDQAYRYRRPRGG 219
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/60 (23%), Positives = 24/60 (40%)
Frame = +3
Query: 150 LPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGGVISVE 329
LP+ + D+ K +G + + + GFV A A+ L+ G + VE
Sbjct: 696 LPRDVRESDVEKFLRGYGKIRDISLKRGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVE 755
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 138 FVGSLPQGSKPEDLRKLFERFGVVTECDIMNR 233
FV + G+ PE+LRK+ E G+ T + M++
Sbjct: 1539 FVATYTSGTTPEELRKISENAGIKTFTNKMDQ 1570
>SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035)
Length = 582
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 519 HRAPPADRVRSRAPDPAGPSCMV 451
+RAPP R + P+ +GP CM+
Sbjct: 18 YRAPPRGRRDLKVPEVSGPYCMI 40
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 292 TTRHLTAASYPWSAVASKNAGSVGAVAVDEVPCAVAWSGAEAA 420
+T H T + W A +AGS G VA + P + SG E A
Sbjct: 3930 STDHTTGTANGWYAYTDASAGSPGDVAPLKTP-RIGMSGPECA 3971
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 135 VFVGSLPQGSKPEDLRKLFERFGVV 209
VFVG+LP K + L+K F ++G V
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEV 47
>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 420 PVRHAPPPRDAPYMRDRPGPVRGYERGPPAAP 515
PV H PP+ P RD P P PP P
Sbjct: 259 PVHHGMPPQYGPGRRDMPPPGAPPGMLPPGMP 290
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Frame = +3
Query: 435 PPPRDAPYMRDRPGPVR-GYERGPPAAPYDERYAYG-------EDRRGFALMDRGP 578
PPP P ++ ++RGP P+D+RY YG ++R DRGP
Sbjct: 78 PPPPPPPRRDEKSYDYDDSWDRGP-GRPHDDRYDYGKFGRPRYDERYDLERFDRGP 132
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 132 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-NRCGFVH 248
++ V ++P + DLR++F FGV+ + +I+ N G H
Sbjct: 69 RLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKH 108
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +3
Query: 129 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--CGFVHMQTEEQA-AAAIRALHNS 299
T ++VG L +DLR F +FG + ++ R C FV + A AAA R+ +
Sbjct: 304 TTLYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCAFVCFTSRAAAEAAADRSFNKL 363
Query: 300 TFNG 311
G
Sbjct: 364 ILKG 367
>SB_19711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 135 VFVGSLPQGSKPEDLRKLFERFGVVTECDI 224
+ + +LP+G + +DL++L + +G V C+I
Sbjct: 121 LIIQNLPKGIQEKDLKELLQLYGNVLVCNI 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,980,838
Number of Sequences: 59808
Number of extensions: 374510
Number of successful extensions: 1427
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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