Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h07f
         (596 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    29   0.15 
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   5.7  
U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase...    23   7.5  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   7.5  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   7.5  
AJ618918-1|CAF01997.1|  228|Anopheles gambiae putative odorant-b...    23   7.5  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   9.9  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 24/87 (27%), Positives = 35/87 (40%)
 Frame = +2

Query: 242  RAYADRGTSGSSNSRASQLDI*RRRHIRGARSHQRTRAAWGRSRWTRFHARWHGXXXXXX 421
            RA +  G+   S SR+      R    +G+RS  R+ +   RSR +R  +R         
Sbjct: 1086 RAGSRAGSGSRSRSRSRSRSRSRSGSAKGSRSRSRSGSGGSRSR-SRSRSRSQSAGSRKS 1144

Query: 422  XXXXXXXSGRTIHEGPAGSGARLRTRS 502
                   SG     G   S +R R+RS
Sbjct: 1145 GSRSRSRSGSQASRGSRRSRSRSRSRS 1171



 Score = 23.4 bits (48), Expect = 5.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 251  ADRGTSGSSNSRASQLDI*RRRHIRGARSHQRTR 352
            A RG+ G S+S   + +  R+R  +GA   Q+ R
Sbjct: 961  ARRGSGGDSDSEEEEGEGSRKRKKKGASGGQKKR 994



 Score = 23.0 bits (47), Expect = 7.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 257  RGTSGSSNSRASQLDI*RRRHIRGARSHQRT 349
            R  SGS  SR S+    R R   G+RS  R+
Sbjct: 1149 RSRSGSQASRGSRRSRSRSRSRSGSRSRSRS 1179


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 485 AHRTRPVPHVWCVPRRGRV 429
           AHR  P  H W   +RG V
Sbjct: 900 AHRLIPEVHSWMAQKRGEV 918


>U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
 Frame = +1

Query: 235 AGSCICRQRNKRQQQF------ARFTTRHLTAASYPWSAV 336
           AG C  R R  R+ Q        RF   HL A+ + WS +
Sbjct: 101 AGFCARRPRKVRKLQHHHVEARIRFAEEHLAASIFWWSKI 140


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 362  GRSRWTRFHARWH 400
            G  + TRFHA WH
Sbjct: 2130 GTVQATRFHASWH 2142


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 362  GRSRWTRFHARWH 400
            G  + TRFHA WH
Sbjct: 2131 GTVQATRFHASWH 2143


>AJ618918-1|CAF01997.1|  228|Anopheles gambiae putative
           odorant-binding protein OBPjj2 protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 177 GPPVWSPAAGCRRTPLFAAP*SLIYITSK 91
           GPPV   AA C  TP    P + +   SK
Sbjct: 63  GPPVPKNAAECCVTPFLVEPSAFMTCHSK 91


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 266  LFLCLHMHEPAPVHYITLCDDAETLKQLS*VLRF 165
            L   LH ++P+P++ +   D A   K +S V  +
Sbjct: 1199 LVFALHYYKPSPLYVMDEIDAALDFKNVSIVAHY 1232


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,250
Number of Sequences: 2352
Number of extensions: 12788
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)