Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h07f
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.75 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.75 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.0  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 322 PWSAVASKNAGSVGAVAVDEVPC 390
           PWS ++ + A  V  + VD+  C
Sbjct: 285 PWSYMSGEKANEVATILVDDCGC 307


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 322 PWSAVASKNAGSVGAVAVDEVPC 390
           PWS ++ + A  V  + VD+  C
Sbjct: 285 PWSYMSGEKANEVATILVDDCGC 307


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 118 MITDLYHFQETMSINCY 68
           M+TD++H QET   + Y
Sbjct: 416 MLTDVFHVQETDKYDAY 432


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 255 SAYARTRTGSLYHTL*RRRN 196
           S Y++TR  +L HTL R  N
Sbjct: 196 SVYSKTRRRALEHTLDRFHN 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,000
Number of Sequences: 438
Number of extensions: 3181
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)