Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h05r
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 34 0.089
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 32 0.36
At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase, pu... 32 0.36
At3g24120.2 68416.m03029 myb family transcription factor contain... 30 1.4
At2g23270.1 68415.m02779 expressed protein ; similar to GP|24648... 30 1.4
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 29 2.5
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 29 2.5
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 29 2.5
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 29 2.5
At4g01985.1 68417.m00265 expressed protein 29 4.4
At1g76010.1 68414.m08825 expressed protein 29 4.4
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 29 4.4
At3g22810.1 68416.m02875 expressed protein ; expression support... 28 5.8
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 28 7.7
At1g32730.1 68414.m04036 expressed protein 28 7.7
At1g21170.1 68414.m02647 expressed protein 28 7.7
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 34.3 bits (75), Expect = 0.089
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = -3
Query: 328 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLM--YAYSEVKRRLDYQLEK 155
L++ E EK Q A+ + L +AK+E +EAAY+ RL+ + E +++ + +L K
Sbjct: 671 LKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSK 730
Query: 154 SNVERRLAQKHMVDWIVSN 98
E L +K+ + ++ N
Sbjct: 731 ERHESDLKEKNRLSRMLGN 749
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -2
Query: 326 GGRNRGR--EDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHV 201
GGR GR D G G P G G R PA RG ++G + V
Sbjct: 37 GGRGGGRGFSDRGGRGRGRGPPRGGARGGRGPAGRGGMKGGSKV 80
>At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase-related protein XTR4
GI:1244754 from [Arabidopsis thaliana]
Length = 357
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 595 GFIPEEWFQ--FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 470
GFI +Q FF S + G YT G+ +A Y + +++V +H+
Sbjct: 73 GFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHD 116
>At3g24120.2 68416.m03029 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 30.3 bits (65), Expect = 1.4
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Frame = -3
Query: 352 GRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRL 173
G+ T + + + GE + + + + +++N Q+ A R ++ EV+RRL
Sbjct: 100 GKESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQM-----EVQRRL 154
Query: 172 DYQLEKSNVERRL-----AQKHMVDWIVSNVTKAITPDQEKQA-LDRCIADLASLARK*T 11
QLE V+RRL AQ + I+ KA A L+ +L+ LA K +
Sbjct: 155 HDQLEYGQVQRRLQLRIEAQGKYLQSILEKACKAFDEQAATFAGLEAAREELSELAIKVS 214
Query: 10 GS 5
S
Sbjct: 215 NS 216
>At2g23270.1 68415.m02779 expressed protein ; similar to
GP|2464853|gnl|PID|e353149|Z99707
Length = 86
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 152 ERGAPSRPEAHGRLD-SEQRDQGDHSGPGEAGPG 54
E G S E H +D +E + G HSGP +GPG
Sbjct: 52 ESGPSSGGEGHRFVDRTETLEYGKHSGPSTSGPG 85
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = -2
Query: 263 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGD 84
PG +P+ R + E ++++R + GL APS E + + SE R+ G
Sbjct: 123 PGYGVSESPSPRISWENERRLKMVR-DHGYGL-------AAPSNIEMNHQYGSEFRNGGQ 174
Query: 83 HSGPGEAGPGPLHRGPGFAG 24
+G P P H P + G
Sbjct: 175 FNGVAPLPPPPPHHPPPYGG 194
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = -2
Query: 263 PGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGD 84
PG +P+ R + E ++++R + GL APS E + + SE R+ G
Sbjct: 123 PGYGVSESPSPRISWENERRLKMVR-DHGYGL-------AAPSNIEMNHQYGSEFRNGGQ 174
Query: 83 HSGPGEAGPGPLHRGPGFAG 24
+G P P H P + G
Sbjct: 175 FNGVAPLPPPPPHHPPPYGG 194
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -2
Query: 176 SGLPAREVERGAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPG 33
SG+P + G P G L + G GP GP P GPG
Sbjct: 185 SGMPGGPLSNGPPPSGMHGGHLSNGPPPSGMPGGPLSNGPPPPMMGPG 232
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -2
Query: 338 RESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEA 207
R GG RG + G R G G+ +R P RGR G A
Sbjct: 4 RGGEGGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRA 47
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 28.7 bits (61), Expect = 4.4
Identities = 28/101 (27%), Positives = 34/101 (33%)
Frame = -2
Query: 326 GGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVER 147
GG+ RGR+ G A G G G G G + G A+ G+ R
Sbjct: 104 GGKGRGRKGGGGAGGGVGGGVGAGGGAGGSVGAGGGIGGGAGGAIGGGASGGVGGGGKGR 163
Query: 146 GAPSRPEAHGRLDSEQRDQGDHSGPGEAGPGPLHRGPGFAG 24
G S A G + G G AG G G G G
Sbjct: 164 GGKSGGGAGGGVGGGVGAGGGAGGSVGAGGGIGSGGGGTVG 204
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 28.7 bits (61), Expect = 4.4
Identities = 38/121 (31%), Positives = 44/121 (36%), Gaps = 13/121 (10%)
Frame = -2
Query: 332 STGGRNRGREDG---AVARAGTGAPHPGQEGERAPAAR----GRLQGEAHVRLLRGEAAS 174
S GGR RGR G R G G + E E R GR +G R RG
Sbjct: 147 SPGGRGRGRGRGRGRGRGRGGRGNAYVNVEHEDGGWEREQSYGRGRGRGRGRSSRGRGRG 206
Query: 173 GLPAREVERGAPSRPEAHGRLDSEQR---DQGDHSGP--GEAG-PGPLHRGPGFAGQEVN 12
G E AP E R D+G + P G G GP RG G+ G +
Sbjct: 207 GYNGPPNEYDAPQDGGYGYDAPHEHRGYDDRGGYDAPPQGRGGYDGPQGRG-GYDGPQGR 265
Query: 11 R 9
R
Sbjct: 266 R 266
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 28.7 bits (61), Expect = 4.4
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Frame = -3
Query: 385 EVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERL 206
EV+A ++ E + +K +EDA+ + R + +QA KEN L+L+ A +
Sbjct: 865 EVDALTSKLAETQT-ALKLVEDALSTAEDNISRLTEENRNVQAAKENAELELQKAVADA- 922
Query: 205 MYAYSEVKRRLDYQL-EKSNVERRLAQ-KHMVDWIVSNVTKA----ITPDQEKQALDR 50
S V LD L KS +E L Q + + I+S +A T + E++ L +
Sbjct: 923 ----SSVASELDEVLATKSTLEAALMQAERNISDIISEKEEAQGRTATAEMEQEMLQK 976
>At3g22810.1 68416.m02875 expressed protein ; expression supported
by MPSS
Length = 472
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -3
Query: 328 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRR 176
+ED G +W A+G +LL + +K ++ ++ + Y RL ++K R
Sbjct: 340 VEDNFLGHCNREWLARGGQLLKRTRKGDLHWKIVSVYINRLNQVILKMKSR 390
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.9 bits (59), Expect = 7.7
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Frame = -3
Query: 388 KEVEATENEWNEGRNQTVKALEDAIE--GEKTEQWRAQGQELLIQAKKENVLLQLEAAYR 215
++ E ++E ++ K LE+A E G++T Q + + +KE +Q+ Y
Sbjct: 1469 RKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEK-RIQILDKYV 1527
Query: 214 ERL---MYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCI 44
+L + +E ++ D +L K ER+ +K + D + + D+E L+R
Sbjct: 1528 HQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQ 1587
Query: 43 ADLASLARK 17
L L+ +
Sbjct: 1588 TALTHLSEE 1596
>At1g32730.1 68414.m04036 expressed protein
Length = 327
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = -3
Query: 409 KLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQL 230
KL + D+ +E ENE + V LE+A + G Q K+EN++ +L
Sbjct: 137 KLKEYRDRNIEV-ENEAFDRYMSNVNLLEEAFSFTSVPDEESHGTAAPEQNKEENIVSEL 195
Query: 229 EAAYRERLMYAYSEVKR 179
+ R S KR
Sbjct: 196 KLRLRSNSARTESFKKR 212
>At1g21170.1 68414.m02647 expressed protein
Length = 1090
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 113 LDSEQRDQGDHSGPGEAGPGPLHRGPGFAGQEVNRKR 3
+ S D+G+ G G G G RG G +G+E R R
Sbjct: 82 ISSGDEDEGNDRGRGGGGDGGGGRGRGGSGKERGRAR 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,402,318
Number of Sequences: 28952
Number of extensions: 345575
Number of successful extensions: 1248
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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