Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h05f
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0197 - 15522167-15523524,15525416-15525683 30 1.2
05_07_0350 - 29457444-29457871,29458786-29461456 29 3.6
05_07_0195 - 28331445-28331641,28331841-28331934,28332019-283320... 29 3.6
07_01_1113 - 10292781-10293299 28 4.8
05_01_0495 - 4136871-4136906,4137043-4137171,4137545-4137694,413... 28 4.8
03_06_0309 - 33039006-33039184,33039753-33039912 28 4.8
02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357... 28 4.8
03_01_0056 - 471338-471919,472013-472213 28 6.3
11_06_0099 + 20070925-20073867 27 8.4
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075... 27 8.4
08_01_1019 - 10290820-10291393,10293978-10294348 27 8.4
>09_04_0197 - 15522167-15523524,15525416-15525683
Length = 541
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 454 GWTRKLKRPRTNGTKVGTKP 513
G++++L RPR+NGT + TKP
Sbjct: 416 GFSQRLTRPRSNGTYLSTKP 435
>05_07_0350 - 29457444-29457871,29458786-29461456
Length = 1032
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/70 (35%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = -3
Query: 265 GIKPSLTLPGSPLTGRAKVFWSCVATSEAEPRATSAVHAVCLL--APERKATRDNIIYRI 92
G P T PGS GRA V W A A AV A ER+ R R
Sbjct: 637 GPAPGTTTPGSGGDGRAPVMWLAAALGLLACSVAFAAAAVATTRSAIERR-RRSGWQMRA 695
Query: 91 FYKLFPKCED 62
F K+ CED
Sbjct: 696 FQKVRFGCED 705
>05_07_0195 -
28331445-28331641,28331841-28331934,28332019-28332099,
28332186-28332234,28332334-28332419,28332513-28332740,
28332819-28332857,28332958-28333047,28333207-28333269,
28333371-28333449,28333539-28333585,28333668-28333730,
28333814-28333864,28333977-28334060,28334162-28334226,
28334559-28334676,28334775-28334825,28335228-28335314,
28335633-28335712,28336676-28336793
Length = 589
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 326 CGSGNIPVQQGNLCNGARILLRTVTAGH 409
CG + PV++GN CNGA + GH
Sbjct: 542 CGVVSSPVRRGNYCNGATKQQKLYQNGH 569
>07_01_1113 - 10292781-10293299
Length = 172
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 177 SASDVATHDQKTFARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLA 338
S+ D AT + PG +RL + + + H + GP+ G+GL+
Sbjct: 91 SSVDAATKGNPPRSARTTSAPGSLRLPEVAQRVVELLHHRHWWFGPWALGLGLS 144
>05_01_0495 -
4136871-4136906,4137043-4137171,4137545-4137694,
4137782-4137847,4138124-4138168,4139022-4139102,
4139202-4139283,4139571-4139642,4140473-4140573,
4140690-4140806,4140929-4141249
Length = 399
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 260 YS*RMVPILPLENWCDGS 313
Y+ RM PI+P+ENW GS
Sbjct: 213 YNPRMDPIIPVENWRKGS 230
>03_06_0309 - 33039006-33039184,33039753-33039912
Length = 112
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 483 SRSLQLPCPTKQPILVRISREPHTP*PAVTVRSNIR 376
+RS+ LP P +P + PH P AV R +R
Sbjct: 11 ARSMALPIPLARPPPLATVARPHPPQDAVQARDGVR 46
>02_03_0109 -
15333228-15334793,15335255-15335392,15335496-15335771,
15336357-15336422,15338140-15338487
Length = 797
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 129 SGASKQTACTALVARGSASDVATHDQKTFAR 221
+ A K AC ALV+RG A+D + + AR
Sbjct: 630 AAAGKLEACRALVSRGGAADAGSETALSVAR 660
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 282 FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 380
+F + V YT GV A YL + E+Y +H+
Sbjct: 47 YFGASIKVPSGYTAGVNTAFYLSNNELYPGQHD 79
>11_06_0099 + 20070925-20073867
Length = 980
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 342 YLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATENEWNE-GRNQT 512
YLC + ++ + L Y A + GP + WL +V+ N+ G N T
Sbjct: 445 YLCYNHLNIVMDPQWLPPFKLEKSYFASITMGPSFSRWLQSQVDIVALAMNDAGINDT 502
>09_04_0717 +
19706160-19706327,19707036-19707157,19707408-19707510,
19707644-19707734,19707960-19708132,19708534-19708622,
19708995-19709085,19709272-19709361,19709807-19709854,
19710033-19710104,19710181-19710274,19710350-19710494,
19710809-19710951,19711601-19711751,19712276-19712449,
19712799-19712874
Length = 609
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 243 KVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL 404
+ +L FIPE W Q + + Y +G L S ++ E SGL L
Sbjct: 337 ETQLKFIPEAWSQIIECRRVLKWTYAYGYYLHNKAKSDFFVYLQGEAESGLERL 390
>08_01_1019 - 10290820-10291393,10293978-10294348
Length = 314
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -2
Query: 350 AQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTP 228
A CC+ + +R F +LEP F + W TP
Sbjct: 44 AMACCRAWRDAAASRPALFAALDLEPAFASVGADAAEWWTP 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,075,482
Number of Sequences: 37544
Number of extensions: 400352
Number of successful extensions: 1281
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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