Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h04r
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0293 + 2207782-2208148,2208515-2208567,2208622-2208698,220...    30   2.5  
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273...    28   7.6  

>11_01_0293 +
           2207782-2208148,2208515-2208567,2208622-2208698,
           2209377-2209772,2209953-2210111,2210522-2210933
          Length = 487

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = +1

Query: 442 IQTKNSCDLKKSHKRKSVFNEGKEF*AELTLGKIAKNMVIPVIGWLWSLQSGSTNKTKTY 621
           + T +  + +K+ +  + F EG     ++T+G   K  +  + GWL        N +KT+
Sbjct: 284 LNTGHWWNYEKTIRSGTYFQEGDAVKMDMTVGDAYKRSIQTLFGWL----HNEVNSSKTH 339

Query: 622 VNLNTVVTIQF 654
           V   T   + F
Sbjct: 340 VIFRTYAPVHF 350


>03_01_0347 -
           2730242-2730425,2730541-2730692,2730782-2730940,
           2734144-2734618,2734713-2734775,2734870-2735078
          Length = 413

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 525 FGLKFFAFVKDRFAFMGLFKIARIFCLDFYLP--IKNFSPIYLIVI 394
           FGLKF+  V   FA  G    A+++C +   P  +  F+P+  I++
Sbjct: 292 FGLKFWCIVYSGFACNGFTVFAQLWCTEKKGPVFVTMFNPLSTIMV 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,706,751
Number of Sequences: 37544
Number of extensions: 322318
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)