Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h04r
         (811 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   2.1  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   2.1  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +1

Query: 457  SCDLKKSHKRKSVFNEGKEF*AELTLGKIAKNMV-IPVIGWLW-SLQSGSTNKTKTYVNL 630
            SC L+ S+K++++ N      +    GK+    V   + GW +  +   +TN+ + Y++ 
Sbjct: 1388 SCWLRGSNKQQNIENAL----SVNCNGKVVHGSVGFSIGGWSYVEVMVDNTNRLEVYISS 1443

Query: 631  NTVVTIQFDSPQCFKYLFSLNV 696
             +  TI  D  + F     LNV
Sbjct: 1444 GSNSTIDVDHLRVFPAQLDLNV 1465


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +1

Query: 457  SCDLKKSHKRKSVFNEGKEF*AELTLGKIAKNMV-IPVIGWLW-SLQSGSTNKTKTYVNL 630
            SC L+ S+K++++ N      +    GK+    V   + GW +  +   +TN+ + Y++ 
Sbjct: 1389 SCWLRGSNKQQNIENAL----SVNCNGKVVHGSVGFSIGGWSYVEVMVDNTNRLEVYISS 1444

Query: 631  NTVVTIQFDSPQCFKYLFSLNV 696
             +  TI  D  + F     LNV
Sbjct: 1445 GSNSTIDVDHLRVFPAQLDLNV 1466


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,297
Number of Sequences: 2352
Number of extensions: 15029
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)