Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h04r
         (811 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14890.1 68418.m01746 NHL repeat-containing protein contains ...    28   6.4  
At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger) fa...    28   8.4  

>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 754

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 574 WLWSLQSGSTNKTKTYVNLNTVVTIQFDS 660
           WLWSLQ+ +T  T T   +++   ++++S
Sbjct: 48  WLWSLQTSTTTTTTTKSGVSSRSMVKYES 76


>At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 185

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 78  LDDIFVALIVTHYIYSLYTSTVYF 7
           LDD+ +ALI   ++ +LY S +YF
Sbjct: 157 LDDLLIALICFLHVAALYRSVLYF 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,170,927
Number of Sequences: 28952
Number of extensions: 290856
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)