Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h04f
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    57   9e-09
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil...    31   0.39 
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i...    30   1.2  
At5g14890.1 68418.m01746 NHL repeat-containing protein contains ...    29   1.6  
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    29   1.6  
At5g64816.2 68418.m08154 expressed protein                             29   2.8  
At5g64816.1 68418.m08153 expressed protein                             29   2.8  
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    28   3.7  
At5g36740.1 68418.m04402 PHD finger family protein                     28   3.7  
At5g36670.1 68418.m04388 PHD finger family protein                     28   3.7  
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    28   3.7  
At1g76750.1 68414.m08932 hypothetical protein                          28   3.7  
At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 famil...    27   6.4  
At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 famil...    27   6.4  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
 Frame = +3

Query: 123 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKK 296
           E++ V   N+  Y G WYEI+ FP+  + KNG  + A Y L  D  + V N    +G + 
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65

Query: 297 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQV 476
           +IEG+A   D  +  AKL V F          +  +  DY    I  + ++    +  + 
Sbjct: 66  FIEGSAYKADPKSDEAKLKVKFYVPPFL---PIIPVTGDYWVLYIDPDYQHALIGQPSRS 122

Query: 477 FVWILSRNKKLEGDA-KTAVDNFIKE 551
           ++WILSR  ++E +  K  V+  ++E
Sbjct: 123 YLWILSRTAQMEEETYKQLVEKAVEE 148


>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646; supporting cDNA
           gi|13160645|dbj|AB036832.1|;
          Length = 876

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = +3

Query: 204 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 383
           EK+GK SS   K +  +  V+   ++D +++  E    L     K++K T   K   ++ 
Sbjct: 515 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKKTK--KKDSLNI 572

Query: 384 DGSVQVLATDYNNYA 428
               QVL+ + NN A
Sbjct: 573 VEEAQVLSVEVNNVA 587


>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
           identical to cDNA CIP4.1 mRNA for COP1-interacting
           protein 4.1,  GI:13160649
          Length = 976

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +3

Query: 204 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 383
           EK+GK SS   K +  +  V+   ++D +++  E    L     K++K +   K   ++ 
Sbjct: 665 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSK--KKDSLNI 722

Query: 384 DGSVQVLATDYNNYA 428
               QVL+ + NN A
Sbjct: 723 VEEAQVLSVEVNNVA 737


>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 754

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 403 WRLTIITTPSLTTANTMTRKSLIKCSSGSSLET 501
           W L   TT + TT + ++ +S++K  SG ++ET
Sbjct: 50  WSLQTSTTTTTTTKSGVSSRSMVKYESGYNMET 82


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 135 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 272
           V NFN++ + G WY I+   N +     C   E+  EGD   V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248


>At5g64816.2 68418.m08154 expressed protein
          Length = 130

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 492 RGSRRTLDETFSCHRICSCKR 430
           RG  ++ DE F C R+C+ KR
Sbjct: 38  RGREKSSDEIFVCERVCTSKR 58


>At5g64816.1 68418.m08153 expressed protein
          Length = 130

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 492 RGSRRTLDETFSCHRICSCKR 430
           RG  ++ DE F C R+C+ KR
Sbjct: 38  RGREKSSDEIFVCERVCTSKR 58


>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 297 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIA 434
           Y   +  ++    KA      F  G  ++DG   +L  DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654


>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 219  CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 326
            C    Y  EGD  +  N+ ++DG  +  E T KLTD
Sbjct: 1020 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1055


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 219  CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 326
            C    Y  EGD  +  N+ ++DG  +  E T KLTD
Sbjct: 1034 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1069


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +3

Query: 180 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVHI 278
           +S FP ES+ + K ++ E+KL G  + V VKN+++
Sbjct: 14  VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYL 48


>At1g76750.1 68414.m08932 hypothetical protein
          Length = 158

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 415 IITTPSLTTANTMTRKSLIKCSSGSSLETRSLKATLKL 528
           I+T   +  ++T+T + L+K S G+S  T SL   LKL
Sbjct: 13  IVTLMLMVASSTVTARPLMKPSMGTSSPTTSLVYRLKL 50


>At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 312

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 243 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYN 419
           EGDV++VKN+ ++ G   K    T    D +N  A L  T +       G    +   YN
Sbjct: 91  EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTG--DTIMVPYN 148

Query: 420 N 422
           N
Sbjct: 149 N 149


>At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 280

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 243 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYN 419
           EGDV++VKN+ ++ G   K    T    D +N  A L  T +       G    +   YN
Sbjct: 59  EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTG--DTIMVPYN 116

Query: 420 N 422
           N
Sbjct: 117 N 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,551,915
Number of Sequences: 28952
Number of extensions: 197587
Number of successful extensions: 604
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)