Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h03r
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   1.8  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    27   4.1  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   7.2  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   9.5  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 107 LENSFILIQQIDVSAEILDNVQTHLDPYDI 196
           + NS   I  IDV+ E L N Q HL PY +
Sbjct: 451 ISNSRNFIDCIDVTREFLKNGQLHLIPYTL 480


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 89  EYV*SDLENSFILIQQIDVSAEILDNVQT-HLDPYDIDQDY 208
           E+V SDLE+ F    + DV    +DN  T  L P + D D+
Sbjct: 276 EFVGSDLESDFSGPGEYDVDDGFIDNRATSQLSPVESDDDF 316


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 532 CQFGLKFFAFVKDRFAFMGLFKIARIF-CLDFYL 434
           C FGL FF ++   ++  G F    +F  L+FY+
Sbjct: 22  CVFGLGFFVWIIYGYSIGGFFAFLSLFHLLEFYI 55


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 248 TTQLCISMNSRVPNSLDRYH 189
           T+QLC++  SR PN++  +H
Sbjct: 21  TSQLCVAYLSRYPNNIGIHH 40


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 588 KLHSQPITGMTIFFAIFPNVSSA*NSLPSLKTDLRLWDF 472
           KL++ P  G  +  +I    SS+  S+P+  T   LW F
Sbjct: 262 KLNNVPYKGSILEVSIKNKASSSVKSIPTTPTGESLWPF 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,761
Number of Sequences: 5004
Number of extensions: 61022
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)