Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h02r
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 50 2e-06
11_04_0234 + 15187065-15188241,15188316-15188494 44 1e-04
10_05_0053 + 8602142-8603581 32 0.53
01_06_0386 - 28917678-28918112 30 1.6
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 29 3.8
01_05_0226 + 19506090-19506187,19506668-19506763,19507780-19507900 29 5.0
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 28 6.6
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 28 6.6
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 28 8.7
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 49.6 bits (113), Expect = 2e-06
Identities = 40/165 (24%), Positives = 69/165 (41%)
Frame = -1
Query: 719 NNKEADYTAPIYTPQNRNPLQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIA 540
N + AP+Y +R +A V WL +G P+ K+V+ I +GR+W L +
Sbjct: 242 NANATAFDAPLY---DRASHYSASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSG 298
Query: 539 GVPPIHTDGPGEAGPYVKTEGLLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAF 360
P+ GP + G G +SY EV + + +G R + + S +Y
Sbjct: 299 VGAPVVAAGPKQRGS--NATGAMSYAEV--QWLAATATRGSRAVITAYDNAS--VASYV- 351
Query: 359 RLPDDNGEGGIWVSYEDPDTAGQKAAYVKSKNLGGVAIVDLSLDD 225
G +WV+++ +K A+ L G + ++ DD
Sbjct: 352 ------SVGDVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNYDD 390
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 44.0 bits (99), Expect = 1e-04
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 1/167 (0%)
Frame = -1
Query: 722 RNNKEADYTAPIYTPQNRNPLQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKL-DADSE 546
+N+ AP+Y +++ +A V WL +G P K+V+ I FGR+W L + D
Sbjct: 240 KNSNVTTADAPLY---DKDSHFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKN 296
Query: 545 IAGVPPIHTDGPGEAGPYVKTEGLLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTY 366
G P T G G+++Y E+ ++ ++ VT ++ Y
Sbjct: 297 GLGAP---TAAAGTKQRKSNQIGVIAYAEI---------EEYLKSQSVFVTHDNQSVADY 344
Query: 365 AFRLPDDNGEGGIWVSYEDPDTAGQKAAYVKSKNLGGVAIVDLSLDD 225
+ G +WVS++ +K +V L G + +S DD
Sbjct: 345 FY-------SGDLWVSFDSAVVVQEKVEFVAKSQLLGYFLSTISFDD 384
>10_05_0053 + 8602142-8603581
Length = 479
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 139 YVIKVKIF*RRYLAALRIGYLSPVQRPRKSSNDRSTIATPPRFFDL 276
Y+ + K RRY+ AL +G++ QR +++S+ S PPRF L
Sbjct: 99 YICRRKPPSRRYVGALAVGFVQ--QRRQENSSSSSGAPPPPRFIPL 142
>01_06_0386 - 28917678-28918112
Length = 144
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 328 MPPSPLSSGRRKAYVPKR--LLGSVTFLR*GRIPFCWLGLINLPQTSG*LSKPSVLTYGP 501
+PPS L+S ++ ++P R L+ + + ++ C LGLI P + S LT G
Sbjct: 35 IPPSALASPMQRIWIPTRTPLIDTDWY----KVVVCSLGLITKPSGNSVDSTACTLTSGA 90
Query: 502 ASPGPSVWIGGTPAISLSASSFQV 573
+S V + G S + F +
Sbjct: 91 SSSKSPVVLPGIAHFGASNAGFDI 114
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 232 NDRSTIATPPRFFDLT*AAFWPAVSGSSYDTQMPPSPLSSGRRKA 366
+D + T P L A A GS T PPSP GRR++
Sbjct: 537 SDNGGMMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581
>01_05_0226 + 19506090-19506187,19506668-19506763,19507780-19507900
Length = 104
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 314 RMIPKCHPHRCHQEDGRRMFRNA 382
+M +CH H H DGR + R A
Sbjct: 35 KMKTRCHDHELHDADGRSILRKA 57
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 196 YLSPVQRPRKSSNDRSTIATP-PRFFDLT*AAFWPAVSGSSYDTQMP-PSPLSSGR 357
+L P + P SS ST ATP P P++S + D+ P PSPLSSGR
Sbjct: 55 FLEP-EVPTDSSLYTSTSATPEPPTIRQKSRNLSPSISHQASDSFSPVPSPLSSGR 109
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 311 DPDTAGQKAAYVKSKNLGGVAIVDLSLDDFRGLCTGDK 198
D + G+ A + G V V ++D+FR LCTGDK
Sbjct: 71 DVEVGGEPAGRIVIGLFGEV--VPKTVDNFRALCTGDK 106
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 459 FWVTEQTFSLNVWSSFAGTISVDWRDSRN 545
F+ T+ ++ VW + A +I+V W SRN
Sbjct: 54 FYATDGGLAVGVWLATAPSITVTWTASRN 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,561,528
Number of Sequences: 37544
Number of extensions: 489063
Number of successful extensions: 1423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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