Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h02r
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 66 4e-11
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 51 1e-06
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 50 3e-06
SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54) 31 0.72
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_9335| Best HMM Match : 7tm_1 (HMM E-Value=8.1e-05) 29 3.8
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 70.9 bits (166), Expect = 1e-12
Identities = 49/157 (31%), Positives = 70/157 (44%)
Frame = -1
Query: 644 AVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIAGVPPIHTDGPGEAGPYVKTEGLLSY 465
AV W+ G PS KI L I +GR++ L ++ P G GPY K G ++Y
Sbjct: 241 AVDLWIAGGMPSNKIALGIPLYGRSFTLKTANKTLDAPATK----GGQGPYTKEAGYIAY 296
Query: 464 PEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGEGGIWVSYEDPDTAGQKA 285
E+C + G+ VT Y D N + WV Y+D + +K
Sbjct: 297 FEIC--------KMGL-----SVTRDPVLVSPYGV---DVNNQ---WVGYDDVTSVQEKV 337
Query: 284 AYVKSKNLGGVAIVDLSLDDFRGLCTGDKYPILRAAK 174
Y+K K+L G + LDDF+G C YP++ A K
Sbjct: 338 NYIKKKSLLGAMFWAMDLDDFKGDCGQGSYPLMTAVK 374
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 65.7 bits (153), Expect = 4e-11
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Frame = -1
Query: 644 AVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIAGVPPIHTDGPGEAGPYVKTEGLLSY 465
A YW+ GAP+ KI L + T+GR +KL AD G+ +G G Y + G L+Y
Sbjct: 354 AAQYWIDKGAPASKIALGLGTYGRAFKL-ADQTRHGL-KAPANGNPTRGQYTREPGFLAY 411
Query: 464 PEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGEGGIWVSYEDPDTAGQKA 285
E+C + +L+ + S A + P + G +WV Y+D + K
Sbjct: 412 YEIC------------KMNLQVTSTESS-----AVKAPYGH-VGDLWVGYDDEYSLSLKV 453
Query: 284 -AYVKSKNLGGVAIVDLSLDDFRG-LCTGDKYPILRAAK 174
+K+K + G + LDDF+G C YP++ A K
Sbjct: 454 ERVIKAKGMAGAMFWAIPLDDFKGQFCGKGPYPLINAVK 492
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 58.0 bits (134), Expect = 7e-09
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 1/161 (0%)
Frame = -1
Query: 644 AVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIAGVPPIHTDGPGEAGPYVKTEGLLSY 465
AV YW+ G P KI L +A +G ++L ++ A P + + G + PY
Sbjct: 623 AVKYWMEKGMPCGKIALGMANYGHAFELSDPTKTALGAPANVN-KGRSYPYY-------- 673
Query: 464 PEVCGKLINPNQQKGMRPHLRKVTD-PSKRFGTYAFRLPDDNGEGGIWVSYEDPDTAGQK 288
E+C KL L KVTD P+K Y + G W++Y+D + G+K
Sbjct: 674 -ELC-KL-----------PLTKVTDNPAK--APYGYH-------GSQWIAYDDVTSLGRK 711
Query: 287 AAYVKSKNLGGVAIVDLSLDDFRGLCTGDKYPILRAAKYRL 165
+K +NL G + LDDF +C +P++ A +Y L
Sbjct: 712 VELIKKENLLGAMFWAIDLDDFGNVCGQGAHPLMGAVRYML 752
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 50.8 bits (116), Expect = 1e-06
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 2/170 (1%)
Frame = -1
Query: 662 LQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIAGVPPIHTDGPGEAGPYVKT 483
+ N D + +G P+ KIVL + T+GR + L E AG + +AG Y
Sbjct: 634 MNNRDTWEKPGIRNGMPANKIVLGLGTYGRAFGL----ESAG------NNGLDAGKYTGA 683
Query: 482 EGLLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGEGGIWVSYEDPD 303
+G L+Y E+C + G+ V + +K Y ++ G WV +++P
Sbjct: 684 KGFLAYFEIC--------KMGL-----TVVENNKAKAPYGYK-------GHDWVGFDNPK 723
Query: 302 TAGQKAAYVKSKN-LGGVAIVDLSLDDFRG-LCTGDKYPILRAAKYRL*N 159
+ K V KN L GV + LDDF G C KYP++ A K L N
Sbjct: 724 SLIYKIDNVVKKNQLRGVMFWAIDLDDFSGEHCGQGKYPLMSAVKNYLTN 773
Score = 42.3 bits (95), Expect = 4e-04
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Frame = -1
Query: 503 AGPYVKTEGLLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGEGGIW 324
+G Y EG L+Y E+C ++G+ V +K Y ++ D W
Sbjct: 280 SGKYTDAEGFLAYYEIC--------KRGLT-----VVHKNKANAPYGYKGKD-------W 319
Query: 323 VSYEDPDTAGQKAAYVKSKN-LGGVAIVDLSLDDFRG-LCTGDKYPILRAAK 174
+ ++DP++ K V KN L GV + LDDF G C KYP++ A K
Sbjct: 320 IGFDDPNSLVYKIDNVVKKNQLRGVMFWAIDLDDFSGEHCGQGKYPLMSAVK 371
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 49.6 bits (113), Expect = 3e-06
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Frame = -1
Query: 518 DGPGEAGPYVKTEGLLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNG 339
+G GPY + G LSY E+C + + K M+ TD S+ Y + D
Sbjct: 10 NGNPPRGPYTRESGFLSYYEICDMM---PKMKTMK------TDQSEVRAPYGYVKQD--- 57
Query: 338 EGGIWVSYEDPDTAGQKA-AYVKSKNLGGVAIVDLSLDDFRG-LCTGDKYPILRAAK 174
+WV Y+D + K +K+K L G L LDDF G C YP++ A K
Sbjct: 58 WADVWVGYDDERSLQLKVEEVIKAKGLAGAMFWALDLDDFDGSSCGKGNYPLMNAVK 114
>SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)
Length = 367
Score = 31.5 bits (68), Expect = 0.72
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 184 LRIGYLSPVQRPRKSSNDR-STIATPPRFFDLT*AAFWPAVSGSSYDTQMPPSPLSSGRR 360
L+I L ++ KS++DR TI P F D + A V+G ++MPP G++
Sbjct: 27 LKIAVLRKHRKTTKSTDDRCGTINRWPTFLDNSFAFIAAEVNGLESCSKMPPKKKGKGKK 86
Query: 361 K 363
K
Sbjct: 87 K 87
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = -3
Query: 720 QQQRS*LHSSYLHPTKSQPTAERRRRCHILAHERCSKPKDSIVYRDLRSYLETGR*QRNC 541
+ + S +H L P + ++RRR H AH R S+ + R + R +R
Sbjct: 187 EHKESPVHHRSLSPEPRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRS 246
Query: 540 GSPSNPH*WSRRS 502
SPS PH S RS
Sbjct: 247 RSPS-PHHRSHRS 258
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 368 YAFRLPDDNGEGGIWVSYEDPDTAGQKAAYVKSKNLGGVAI 246
+ ++ PD + +G V+YEDP TA + K+ G +I
Sbjct: 208 WIYKHPDGSSKGECTVTYEDPPTASAAIEWFNGKDFMGQSI 248
>SB_9335| Best HMM Match : 7tm_1 (HMM E-Value=8.1e-05)
Length = 226
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -2
Query: 352 LMTTVRVAFGYHTRILILLARKLLTSSQRISVVSLLWTYHWMTSAVSVPETSIQSLGPL 176
++T + + F + I RKL + + S++ LLW + WMT +V E ++S P+
Sbjct: 106 IVTLLLICFDRYESIRNPFRRKLNFTKAQKSLL-LLWIFAWMTFSVPFIEHGLRSTTPV 163
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,683,545
Number of Sequences: 59808
Number of extensions: 538644
Number of successful extensions: 1573
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1568
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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