Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h02r
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 40 0.002
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 40 0.002
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 39 0.003
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 39 0.004
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 37 0.012
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 36 0.027
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 36 0.027
At1g79890.1 68414.m09334 helicase-related similar to CHL1 potent... 33 0.19
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 32 0.45
At5g59590.1 68418.m07467 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.78
At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil... 30 1.4
At5g04590.1 68418.m00458 sulfite reductase / ferredoxin (SIR) id... 30 1.8
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr... 30 1.8
At4g14630.1 68417.m02251 germin-like protein (GLP9) identical to... 30 1.8
At5g03390.1 68418.m00292 expressed protein contains Pfam profile... 29 4.1
At1g26110.1 68414.m03186 expressed protein 29 4.1
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine... 27 9.6
At3g49670.1 68416.m05429 leucine-rich repeat transmembrane prote... 27 9.6
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -1
Query: 695 APIYTPQNRNPLQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKL-DADSEIAGVPPIHT 519
AP+Y P P + DA V W +G P++K VL +G W L DA + H
Sbjct: 221 APLYDPITTGP--SGDAGVRAWTQAGLPAKKAVLGFPLYGYAWCLTDAKN--------HN 270
Query: 518 DGPGEAGPYVKTEGLLSYPEV 456
+GP + +G + Y ++
Sbjct: 271 YYANSSGPAISPDGSIGYDQI 291
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 39.5 bits (88), Expect = 0.002
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 1/162 (0%)
Frame = -1
Query: 695 APIYTPQNRNPLQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKL-DADSEIAGVPPIHT 519
A ++ P N P + DA W+ +G P++K VL +G W+L +A+S H+
Sbjct: 223 AALFDPSNAGP--SGDAGTRSWIQAGLPAKKAVLGFPYYGYAWRLTNANS--------HS 272
Query: 518 DGPGEAGPYVKTEGLLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNG 339
G + +G + Y ++ K I N S G Y +
Sbjct: 273 YYAPTTGAAISPDGSIGYGQI-RKFIVDNG--------ATTVYNSTVVGDYCY------- 316
Query: 338 EGGIWVSYEDPDTAGQKAAYVKSKNLGGVAIVDLSLDDFRGL 213
G W+ Y+D + K Y K + L G + DD GL
Sbjct: 317 AGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGL 358
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 39.1 bits (87), Expect = 0.003
Identities = 38/155 (24%), Positives = 60/155 (38%)
Frame = -1
Query: 656 NADAAVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIAGVPPIHTDGPGEAGPYVKTEG 477
+ D+ V W+ +G P++K VL +G W L AD P H GP + +G
Sbjct: 125 SGDSGVKDWIDAGLPAEKAVLGFPYYGWAWTL-AD------PKNHGYYVDTTGPAISDDG 177
Query: 476 LLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGEGGIWVSYEDPDTA 297
+SY ++ +++ K H V G Y + G W+ Y+ ++
Sbjct: 178 EISYSQLKTWIVD---NKATTVHDNIV------IGDYCY-------AGTTWIGYDSEESI 221
Query: 296 GQKAAYVKSKNLGGVAIVDLSLDDFRGLCTGDKYP 192
K Y K K L G + DD L + P
Sbjct: 222 VTKVIYAKQKGLLGYFSWQVGGDDKSELSSAGSSP 256
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 38.7 bits (86), Expect = 0.004
Identities = 41/168 (24%), Positives = 66/168 (39%)
Frame = -1
Query: 695 APIYTPQNRNPLQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIAGVPPIHTD 516
A +Y P + ++ D+ V W +G P++K VL +G W L AD ++ G T
Sbjct: 202 ASLYLPTDG---RSGDSGVRDWTEAGLPAKKAVLGFPYYGWAWTL-ADPDVNGYDANTT- 256
Query: 515 GPGEAGPYVKTEGLLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGE 336
GP + +G +SY ++ +++ KV D G Y +
Sbjct: 257 -----GPAISDDGEISYRQLQTWIVDNG--------ATKVHD-DMMVGDYCY-------A 295
Query: 335 GGIWVSYEDPDTAGQKAAYVKSKNLGGVAIVDLSLDDFRGLCTGDKYP 192
G W+ Y+ + K Y K K L G + DD L + P
Sbjct: 296 GTTWIGYDSEKSIVTKVIYAKQKGLLGYFSWHVGGDDNSELSSAGSTP 343
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 37.1 bits (82), Expect = 0.012
Identities = 36/137 (26%), Positives = 55/137 (40%)
Frame = -1
Query: 698 TAPIYTPQNRNPLQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIAGVPPIHT 519
TA ++ N N + D+ + W+ G P +K VL + G W L D + G
Sbjct: 214 TAGLHVSSN-NEGPSGDSGLKQWIKDGLPEKKAVLGFSYVGWAWTLQNDKD-TGYNAA-A 270
Query: 518 DGPGEAGPYVKTEGLLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNG 339
G ++ V +G ++Y ++ K I + KV DP K G Y F
Sbjct: 271 AGVAKSEDDVSEDGSINYAQI-NKFIRDEE-------AAKVYDP-KVVGHYCFAKK---- 317
Query: 338 EGGIWVSYEDPDTAGQK 288
IW+ YED + K
Sbjct: 318 ---IWIGYEDTQSVEAK 331
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 35.9 bits (79), Expect = 0.027
Identities = 36/147 (24%), Positives = 63/147 (42%)
Frame = -1
Query: 695 APIYTPQNRNPLQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIAGVPPIHTD 516
A ++ P N ++ D+ ++ WL + P++K VL + G W L+ D+E G TD
Sbjct: 211 AALFDPSNPAG-RSGDSGLSKWLEAKLPAKKAVLGFSYCGWAWTLE-DAENNGYDAA-TD 267
Query: 515 GPGEAGPYVKTEGLLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGE 336
G + ++G ++Y ++ +I+ DP+ G Y +
Sbjct: 268 GAA-----ISSDGSITYAKIRNYIIDNG--------AATFHDPAV-IGFYCY-------V 306
Query: 335 GGIWVSYEDPDTAGQKAAYVKSKNLGG 255
G W+ Y+D + K Y K K L G
Sbjct: 307 GTTWIGYDDNQSIVSKVRYAKLKGLLG 333
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -1
Query: 695 APIYTPQNRNPLQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKLDADSE 546
A +Y P + P D + +WL +G P +K V G +W LD D +
Sbjct: 191 AGLYDPSIKGPC--GDTGLKHWLKAGLPEKKAVFGFPYVGWSWTLDDDKD 238
>At1g79890.1 68414.m09334 helicase-related similar to CHL1 potential
helicase protein (GI:2632247) [Homo sapiens]; similar to
helicase GB:AAB06962 [Homo sapiens]
Length = 882
Score = 33.1 bits (72), Expect = 0.19
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = -1
Query: 494 YVKTEGLLSYPEVCGKLINPNQQKGMRPH--LRKVTDPSKRFGTYAFRLPDDNGEGGIWV 321
Y+K ++ G+ + QK H + K+T + F L ++NG+G I +
Sbjct: 466 YIKESNIIHKVSGYGERVAAMLQKDPVAHEEMSKLTS-FRAFSDMLVALTNNNGDGRIII 524
Query: 320 SYEDPDTAGQKAAYVKSKNLGGVAIVDLSLDD 225
S T+GQ Y+K L G + +D+
Sbjct: 525 SRTSSSTSGQHGGYIKYVMLTGAKLFSEVVDE 556
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 695 APIYTPQN-RNPLQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIA 540
A ++ P N + P D + W+ +G P++K VL G TW L + ++ A
Sbjct: 210 AALFDPSNPKGPC--GDYGLKEWIKAGLPAKKAVLGFPYVGWTWSLGSGNDAA 260
>At5g59590.1 68418.m07467 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 449
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -2
Query: 286 LLTSSQRISVVSLLWTYHWMTSAVSVPETSIQSLGPLNTVSKI 158
+LT S R+S +H++T S+ E+ +Q+LGP V K+
Sbjct: 42 VLTQSNRVSSSKDFSDFHFLTIPGSLTESDLQNLGPQKFVLKL 84
>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin
2 (VLN2) [Arabidopsis thaliana] GI:3415115
Length = 976
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 175 LAALRIGYLSPVQRPRKSSNDR-STIATPPRFFDLT*AAFWPAVSGSSYDTQMPPSPLSS 351
LAAL + S RP SS DR + PR AA A + SS T+ PP P
Sbjct: 761 LAALNSAFNSSSNRPAYSSQDRLNESHDGPRQRAEALAALSSAFNSSSSSTKSPPPPRPV 820
Query: 352 GRRKA 366
G +A
Sbjct: 821 GTSQA 825
>At5g04590.1 68418.m00458 sulfite reductase / ferredoxin (SIR)
identical to sulfite reductase [Arabidopsis thaliana]
GI:804953, GI:2584721
Length = 642
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 472 SKPSVLTYGPASPGPS---VWIGGTPAISLSASSFQVRPKV 585
++P + G GP+ VW+GGTP ++ A SF + KV
Sbjct: 554 ARPYMAELGLVGDGPNSYQVWLGGTPNLTQIARSFMDKVKV 594
>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
protein bHLH protein, Arabidopsis thaliana,
PATCHX:E255557
Length = 589
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 377 FGTYAFRLPDDNGEG--GIWVSYEDPDTAGQKAAYVKSKNLGGVAIVDLSLDDFRGLCTG 204
FG++AF L D GE G+W+S + +G AA V + N G + + LC G
Sbjct: 259 FGSWAFNLNPDQGENDPGLWISEPNGVDSGLVAAPVMN-NGGNDSTSNSDSQPISKLCNG 317
>At4g14630.1 68417.m02251 germin-like protein (GLP9) identical to
germin-like protein subfamily 1 member 8 [SP|Q9LEA7]
Length = 222
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 526 IGGTPAISLSASSFQVRPKVAIDNTIF 606
+GGTPA++++A S Q + I NTIF
Sbjct: 167 LGGTPAVAIAALSSQNAGVITIANTIF 193
>At5g03390.1 68418.m00292 expressed protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 373
Score = 28.7 bits (61), Expect = 4.1
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Frame = +3
Query: 324 PNATLTVVIRKTEGVCSETLAGVSNLPEVRTHSLLLVGVDQLTADFWVTEQTFSLNVWSS 503
P LT + V S V NLP + + + L+A +Q L V SS
Sbjct: 97 PTLYLTNIFNPCASVSSHK---VFNLPPLEDDAKARISSISLSAS--PNQQDCVLAVKSS 151
Query: 504 FAGTISVDWR--DSRNFAVSVQFPGTT----EGRDRQYYLLAWSTAREPVCDSGVGVL 659
+ +S+ WR DS + V FP + GRDR++YLL + E C+ + ++
Sbjct: 152 SSPFLSL-WRPGDSAWTRIKVPFPASNVMMYSGRDRKFYLLPRESKEE--CEGPIDLI 206
>At1g26110.1 68414.m03186 expressed protein
Length = 611
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 472 SKPSVLTYGPASPGPSVWIGGTPAISLSASSFQVRPK 582
+KPSV+T GP SP + + P +S+S Q +PK
Sbjct: 327 NKPSVVT-GPISPPQTTPLTSAPVAGVSSSISQDKPK 362
>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
similar to cytidine deaminase (CDD) [Arabidopsis
thaliana] GI:3046700; contains Pfam profile PF00383:
Cytidine and deoxycytidylate deaminase zinc-binding
Length = 293
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 686 YTPQNRNPLQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKLDADSEIAGVPPIHT 519
+TPQN +PL N T SG+P + + + GRT+ + E+ G+P H+
Sbjct: 20 FTPQNLSPLINRAIPHTRAQISGSP--VVAVGRGSSGRTF-FGVNVELPGLPLDHS 72
>At3g49670.1 68416.m05429 leucine-rich repeat transmembrane protein
kinase, putative CLAVATA1 receptor kinase, Arabidopsis
thaliana, EMBL:ATU96879
Length = 1002
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 603 LLAWSTAREPVCD--SGVGVLQWVAILWGVNRSCVI 704
LL T ++PV + GV ++QWV + N+ CV+
Sbjct: 883 LLELITGKKPVGEFGDGVDIVQWVRSMTDSNKDCVL 918
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,350,863
Number of Sequences: 28952
Number of extensions: 375950
Number of successful extensions: 1177
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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