Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h02f
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 355 NTVRPGYLAFKLVIAR*LSCVRS 287
           N  RP YLA K  +     C+RS
Sbjct: 155 NRNRPAYLASKCALTTLTDCLRS 177


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 610  CSDSFSSTGVVPNVFL 563
            CSD FS  GV+ ++ +
Sbjct: 976  CSDYFSQGGVIESIMV 991



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 152  QRISSPHAAVGPRSRSVVLHPLAVRL 229
            +R+   +    P     VLH LAV L
Sbjct: 1063 ERLYDCYVCYSPNDEDFVLHSLAVEL 1088


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 544 PQVERIFLGLTLGNCQARSIPSKPYCSANS 455
           P+  RI+  +T  +   RS+ + P  +A+S
Sbjct: 669 PEERRIYSPITFQDVARRSVANSPTKNADS 698


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,848
Number of Sequences: 438
Number of extensions: 4277
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)