Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h01f
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    33   0.19 
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    33   0.19 
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        30   1.3  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    30   1.3  
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    28   5.4  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     28   5.4  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    28   5.4  
AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p4...    28   5.4  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    27   7.2  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      27   7.2  

>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 25/84 (29%), Positives = 42/84 (50%)
 Frame = +3

Query: 135 KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLE 314
           K KK+ S F +    +T D YY + + + + +    +TN   V+E +K Y     P + +
Sbjct: 51  KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99

Query: 315 FSVFYDKMRDEAIALFHLFYYAKD 386
           +S       +EAIA FH +Y  K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 25/84 (29%), Positives = 42/84 (50%)
 Frame = +3

Query: 135 KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLE 314
           K KK+ S F +    +T D YY + + + + +    +TN   V+E +K Y     P + +
Sbjct: 51  KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99

Query: 315 FSVFYDKMRDEAIALFHLFYYAKD 386
           +S       +EAIA FH +Y  K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 303 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 437
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 303 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 437
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 566 VNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 444
           V  L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 161 VKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 566 VNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 444
           V  L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 161 VKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 566 VNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 444
           V  L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 161 VKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p450
           family protein 34A6 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 153 SFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEF 272
           +F   +S ++TDDE +K  K+++ E  M+N   +K +  F
Sbjct: 397 AFATQLSAMHTDDETFKNHKEFNPERFMENNNLEKKLIPF 436


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 102  KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 197
            ++K+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 102  KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 197
            ++K+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 102  KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 197
            ++K+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,595,377
Number of Sequences: 27780
Number of extensions: 257678
Number of successful extensions: 734
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)