Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g24r
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    66   7e-12
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    35   0.014
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.54 
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    28   1.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    26   6.7  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   8.9  

>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 65.7 bits (153), Expect = 7e-12
 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
 Frame = -1

Query: 607 TFGENVGAIGVTKVGSRRVVQFAAGLMVLQGVVGKLGAVFIIIPQPVVGGLFCVMFGMIS 428
           TF +N G I +TK  +RR   F A ++   G+  K  AVF+ IP PV+GG+   +F  ++
Sbjct: 404 TFAQNNGVISLTKCANRRAGFFCAVILFFMGLFAKFAAVFVAIPSPVLGGMTTFLFSSVA 463

Query: 427 AFGLSALQYVDLNSSRNLYIIGFSLFF---PLVLTRWMA---AHSGVIHTGLEALDAVLQ 266
             G++ +  +  N  RN +I+  S+      +++  W      +SG     +  LDA+  
Sbjct: 464 VSGIAIISQIPFN-RRNRFILTASMTLGMGAILVPDWFTYFFEYSGPNKALVGFLDAI-T 521

Query: 265 VLLSTSILVGGAVGCLLDNVIP 200
           +++     +G  +   L+ ++P
Sbjct: 522 LVMENGFAIGAFISIFLNLILP 543


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = -1

Query: 577 VTKVGSRRVVQFAAGLMVLQGVVGKLGAVFIIIPQPVVGGLFCVMFGMISAFGLSALQYV 398
           + +V  +R   F  GLM +  + G L  V   IPQ V+ GLF VM G  + FG    Q V
Sbjct: 368 IDRVVEQRASNFIQGLMTVGTMTGPLLLVLHQIPQCVLAGLFWVM-GFSAIFGNGITQNV 426


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +3

Query: 441 NITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPTFSPKVLVP 617
           N T   PPTT       TAP  PTT  ++       TT  + T V P     +   +VP
Sbjct: 91  NTTTTVPPTTSLNTTTTTAP--PTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVP 147


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +2

Query: 329 PGQDQREEQAEPYDVQVPRAVQVHV-LKC*ETEGRYHSEHNAEEAADYGLRDDDEHGSQ- 502
           P  D R E  +  D       ++HV  K  E   R  SEHN  E       ++ EH ++ 
Sbjct: 152 PSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPEYHTESKNEESEHNTKS 211

Query: 503 LAHDPLQHHEAGGE 544
           +  +P+ H ++  E
Sbjct: 212 IREEPIHHVDSKNE 225


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 459 PPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPTFSP 602
           PPT+      N+ P LPTT  S     +   T    +L TP+ PT  P
Sbjct: 151 PPTSTSSTDTNSNP-LPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPP 197



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +3

Query: 459 PPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPTFSPKVLVPFPEP 629
           PPT+      N++P LPTT  S     +   T    T VTP  P  S       P P
Sbjct: 264 PPTSTSSTDTNSSP-LPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPP 319



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 438 PNITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPTFSP 602
           P IT+    T+      +++  LP+T  S     +   T    +L TP+ PT  P
Sbjct: 86  PIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPP 140


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 420 PKADIIPNITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPT 593
           P A  +P++ Q  PP      ++  APS+P  P + + P      +R    V P AP+
Sbjct: 581 PVAPEVPSVPQ--PPVAP---VVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPS 633



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
 Frame = +3

Query: 204 ITLSNRQPTAPPTSMEVDXXXXXXXXXXXXPVCMT--PL*AAIHRVRTSGKN-RLNPMMY 374
           ++ +N  PT P T+ ++             P   T  P   +     TSG++  LNP   
Sbjct: 428 VSENNDPPTFPKTAAKISSFNSKAGTSFAKPRPFTNNPNPISAPEKPTSGESLSLNPPP- 486

Query: 375 RFLELFRSTY*SAERPKADIIPNITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTT 554
              ++F     S+   KA   P++     P      ++  APS+   P + + P      
Sbjct: 487 AMPKVFPERDISSASQKA-AQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAP 545

Query: 555 RRDPTLVTPMAPTFSPKVLVP 617
           +R    V P AP+   +  VP
Sbjct: 546 QRPAAPVVPEAPSVPQRPAVP 566



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 420 PKADIIPNITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPT 593
           P A  +P++ Q RP       ++  APS+P  P + + P      +R    V P AP+
Sbjct: 611 PVAPEVPSVPQ-RPAVP----VVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPS 663


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 414 ERPKADIIPNITQKRPPTTGCGMMM 488
           E+  +++IPN+++ R P   CG ++
Sbjct: 226 EKTHSNLIPNLSRVRSPQQACGRIL 250


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 350 EQAEPYDVQVPRAVQVHVLKC 412
           ++ EPY + +  A++ H+ KC
Sbjct: 31  QENEPYAISIVNAIEKHIQKC 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,358
Number of Sequences: 5004
Number of extensions: 52404
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)