Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g24r
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.047
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   7.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.2  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   7.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.1 bits (62), Expect = 0.047
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 419 SLSTSVRGPEQLEEPVHHRVQPVLPAGPDPVDGGSQR 309
           +L +  R  E L    HHR+ P   +  DPV G  ++
Sbjct: 52  TLYSGTRSSESLTAQAHHRLYPAFSSSCDPVPGNLEQ 88



 Score = 25.8 bits (54), Expect = 0.44
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +2

Query: 203  DHVVQQTADGAPHEYGGGQQHLEHRVQRLQPRVYDAAVSRHPPGQDQREEQAEPYDVQ 376
            DH  Q+T    P +    QQ  + + Q  QP+         P  Q Q+++Q +P   Q
Sbjct: 1494 DHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQP----QPQQQQQQQQQQQPQQQQ 1547


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 271 LQVLLSTSILVGGAVGCLLD 212
           + V+L+T  L+   V CLLD
Sbjct: 33  IDVVLNTERLLNAYVNCLLD 52


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -2

Query: 669 WAPRGWARR 643
           W P GW RR
Sbjct: 178 WTPHGWMRR 186


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 271 LQVLLSTSILVGGAVGCLLD 212
           + V+L+T  L+   V CLLD
Sbjct: 33  IDVVLNTERLLNAYVNCLLD 52


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 535 GLMVLQ-GVVGKLGAVFIIIPQPVVGGLFCVMFGMISAFGLSALQYVDLNSSRNL 374
           GL+  Q G  GKL   F +I   ++  L  ++    S FG+  L    + S  NL
Sbjct: 251 GLVAGQFGAQGKLIVDFFMILNEIIMKLVGIIIMWYSPFGIMCLIAGKIMSINNL 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,403
Number of Sequences: 438
Number of extensions: 4255
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)