Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g24f
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    30   0.29 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    28   1.2  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   1.6  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   3.6  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.6  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    26   4.8  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   6.3  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    25   6.3  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.3  

>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = +3

Query: 249 YGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPDRSNIISTMIFVTGL 428
           + ++   P  L + +  QH L M+G + + P I+  A     T    + ++S  +  +G+
Sbjct: 58  FSLNAKVPVLLALLLGFQHALAMVGGVTSPPRII--AASANLTTEQTNYLVSAGLISSGI 115

Query: 429 ITWLQ 443
           +T +Q
Sbjct: 116 MTLIQ 120


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 317 DWGHCRDPVHPLPGSLHGGNRSRPIQYYIYYDICHRFNNL 436
           +WG    PV PL      GN S P+QY  Y+D+    N L
Sbjct: 17  NWG---SPVKPLNYKTAIGNSSIPLQYRNYWDVFQANNVL 53


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 242 IAFACLLWFLFTSYIIDALRTNQIILTVNFTHYY 141
           I  A L++F F   II+  RT +   T+ FT++Y
Sbjct: 41  ICIAALIFFFFIIGIINRRRTKKGQATIPFTNFY 74


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 419 DKYHSRYNIGSVWICFLHAESRAEDERDRDNGPNHR 312
           D+Y  R N  +  +  +  E++ EDE+D  N P++R
Sbjct: 535 DEYRRRRNRTAQRVVEIPNETQTEDEQDGTNTPDNR 570


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 309 LTMIGAIVAIPFILCPALCMEETDPDRSNIISTMIF--VTGLITWLQATFGCRLPIVQGG 482
           LT +G I+  P +    LC+      R +++    F  +TG++ WL +T+     IV   
Sbjct: 425 LTFLG-IILTPEVSAVTLCLFWNKMTRFSLVVGAPFGTITGVVCWLASTYSFCDGIVNKD 483

Query: 483 TI 488
           T+
Sbjct: 484 TV 485


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 147 MSKIDCQYDLVSSEC 191
           M+KIDCQY +   EC
Sbjct: 317 MTKIDCQYPVAIQEC 331


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 251 WDRRHAALVPLYIHGFTALPDDDWGHCRDPVHP 349
           W      LV L++ G      + WG C   +HP
Sbjct: 201 WSPMGTYLVSLHLRGIQLWGGESWGMCARFLHP 233


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +3

Query: 270 PWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPDRSN 395
           PW+L  F  +  Y      ++ +P +  P    ++  PD  N
Sbjct: 442 PWHLGKFSKINGYAACAFVLLMVPILCFPQFRGKDNTPDAMN 483


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = +2

Query: 362 LHGGNRSRPIQYYIYYDICHRFNNLASGDLRLSTAY 469
           +H  N+  P++   +      F+N+  G + + +AY
Sbjct: 331 IHSFNKGWPVKIEFFVSFFKNFSNIVEGSMEVYSAY 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,954
Number of Sequences: 5004
Number of extensions: 51676
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)