Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g24f
(593 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6572| Best HMM Match : Xan_ur_permease (HMM E-Value=0.17) 126 1e-29
SB_7734| Best HMM Match : CbiM (HMM E-Value=9.8) 124 5e-29
SB_44603| Best HMM Match : Xan_ur_permease (HMM E-Value=0.00049) 124 5e-29
SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43) 98 4e-21
SB_38880| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_55834| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_47878| Best HMM Match : PARP_regulatory (HMM E-Value=0.65) 31 0.70
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_46574| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_36276| Best HMM Match : Hep_Hag (HMM E-Value=4) 29 3.7
SB_22037| Best HMM Match : Xan_ur_permease (HMM E-Value=2e-07) 28 6.5
>SB_6572| Best HMM Match : Xan_ur_permease (HMM E-Value=0.17)
Length = 258
Score = 126 bits (305), Expect = 1e-29
Identities = 58/120 (48%), Positives = 78/120 (65%)
Frame = +3
Query: 195 NDVRGEQKPEEARKGNVTYGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEE 374
ND+ E K G + Y +D+ PPWY C+ + QHYLTM+G ++IPFIL +C
Sbjct: 17 NDI--ETKKRRKALG-LAYVVDENPPWYACLSLGFQHYLTMLGGTLSIPFILSGPMCFSN 73
Query: 375 TDPDRSNIISTMIFVTGLITWLQATFGCRLPIVQGGTISFLVPTLAILNLPAWKCPEEEI 554
+ ++ST+ FV+G+ T LQ TFG RLPIVQGGT SFL PT AIL+LP +KCP + +
Sbjct: 74 NPLVVAEVLSTIFFVSGISTLLQTTFGVRLPIVQGGTFSFLAPTFAILSLPQFKCPTDTV 133
>SB_7734| Best HMM Match : CbiM (HMM E-Value=9.8)
Length = 135
Score = 124 bits (299), Expect = 5e-29
Identities = 56/112 (50%), Positives = 76/112 (67%)
Frame = +3
Query: 207 GEQKPEEARKGNVTYGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPD 386
G++K ++ R G + Y I++TPPWYLCI + QHYLTM+GA +A+P L +C E D
Sbjct: 24 GKRKMKK-RVGGLAYMINETPPWYLCILLGFQHYLTMLGANLAVPLALRKYMCFETNDLA 82
Query: 387 RSNIISTMIFVTGLITWLQATFGCRLPIVQGGTISFLVPTLAILNLPAWKCP 542
S +I+T+ F +G+ T LQ TFG RLPIVQG T +F+ P AIL L +KCP
Sbjct: 83 LSEVIATVFFTSGIATLLQTTFGVRLPIVQGSTFTFIAPATAILTLDKFKCP 134
>SB_44603| Best HMM Match : Xan_ur_permease (HMM E-Value=0.00049)
Length = 453
Score = 124 bits (299), Expect = 5e-29
Identities = 56/112 (50%), Positives = 76/112 (67%)
Frame = +3
Query: 207 GEQKPEEARKGNVTYGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPD 386
G++K ++ R G + Y I++TPPWYLCI + QHYLTM+GA +A+P L +C E D
Sbjct: 65 GKRKMKK-RVGGLAYMINETPPWYLCILLGFQHYLTMLGANLAVPLALRKYMCFETNDLA 123
Query: 387 RSNIISTMIFVTGLITWLQATFGCRLPIVQGGTISFLVPTLAILNLPAWKCP 542
S +I+T+ F +G+ T LQ TFG RLPIVQG T +F+ P AIL L +KCP
Sbjct: 124 LSEVIATVFFTSGIATLLQTTFGVRLPIVQGSTFTFIAPATAILTLDKFKCP 175
>SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43)
Length = 774
Score = 98.3 bits (234), Expect = 4e-21
Identities = 43/80 (53%), Positives = 57/80 (71%)
Frame = +3
Query: 303 HYLTMIGAIVAIPFILCPALCMEETDPDRSNIISTMIFVTGLITWLQATFGCRLPIVQGG 482
HYLTM+G ++IPF+L +C + ++ST+ FV+G+ T LQ TFG RLPIVQGG
Sbjct: 691 HYLTMLGGTLSIPFVLSGPMCFSNNPLVVAEVLSTIFFVSGISTLLQTTFGVRLPIVQGG 750
Query: 483 TISFLVPTLAILNLPAWKCP 542
T +FL PT AIL+LP +KCP
Sbjct: 751 TFTFLAPTFAILSLPQFKCP 770
Score = 29.9 bits (64), Expect = 1.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 243 VTYGIDDTPPWYLCIFMALQH 305
+ Y +D+ PPWY C+ + Q+
Sbjct: 532 LAYVVDENPPWYACLSLGFQN 552
>SB_38880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 57.6 bits (133), Expect = 7e-09
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Frame = +3
Query: 210 EQKPEEARKG-NVTYGIDDTPPWYLCIFMALQ--HYLTMIGAIVAIPFILCPALCMEETD 380
+Q +E RK + Y +D+ PPWY+C+ + Q L++ + + + + T+
Sbjct: 70 KQLAKERRKALGLAYAVDENPPWYICLILGFQVAQALSVSNLELFLSIVDVIEGILNFTE 129
Query: 381 PDRSNIISTMIFVTGLITWLQATFGCRLPIVQGGTISFLVPTLAILNLPAWKC 539
+S + + ++ LPIVQGGT SFL P AIL+LP W+C
Sbjct: 130 QRKSGPKCALNRLN-----VEIIDNYNLPIVQGGTFSFLAPIFAILSLPKWQC 177
>SB_55834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/54 (48%), Positives = 35/54 (64%)
Frame = +3
Query: 303 HYLTMIGAIVAIPFILCPALCMEETDPDRSNIISTMIFVTGLITWLQATFGCRL 464
HYLTM G+ VA+P IL +C + + +S IIST+ FV+GL T +Q G RL
Sbjct: 158 HYLTMFGSTVAVPLILAAPMCYDNSPLAKSEIISTIFFVSGLCTLIQTILGNRL 211
>SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +3
Query: 381 PDRSNIISTMIFVTGLITWLQATFGCRLPIVQGGTISFLVPTLAILNLPAWKCPEEE 551
P R + + T + V TWLQ++F LP+V G F VP + L W P E
Sbjct: 132 PMRMSAVKTRVLVA--YTWLQSSFTAILPLVGWGIYGFQVPKSSCTVL--WDNPRSE 184
>SB_47878| Best HMM Match : PARP_regulatory (HMM E-Value=0.65)
Length = 223
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 423 GLITWLQATFGCRLPIVQGGTISFLVPTLAILNLPAWKCPEE 548
G++TW+ C++P V + F ++ L L KCPE+
Sbjct: 65 GVVTWIHVRDSCQIPSVARRVVVFDDDNVSDLALQIRKCPED 106
>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 153 KIDCQYDLVSSECVNDVRGEQKPEEARKG--NVTYGIDDTPPWYLCIFMALQ 302
K+ ++D ++ V K +R+ + Y +D+ PPWY C+ + Q
Sbjct: 9 KLPVEHDQENNLTVLSPGNNNKNARSRRKALGLAYVVDENPPWYACLSLGFQ 60
>SB_46574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 273 WYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPDRSNIISTMI 413
W+ + AL LT++G + I ILC +EET P+ +I+S +
Sbjct: 33 WFW-VLHALISALTVVGNGLVIWVILCKRSLLEETSPNGRSILSLAV 78
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 165 QYDLVSSECVNDVRGEQKPEEARKGNVTYGIDDTPPWYL 281
Q D+ S C GE +PE+ R N + PPW L
Sbjct: 1298 QQDIAFSTCTASPSGESRPEDTRNDNPA---NYVPPWEL 1333
>SB_36276| Best HMM Match : Hep_Hag (HMM E-Value=4)
Length = 140
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 390 SNIISTMIFVTGLITWLQATFGCRLPIVQGGTIS 491
+N I+T G+ITW GC +++G T S
Sbjct: 78 ANAINTETKPVGVITWPVGILGCNTRLIRGSTAS 111
>SB_22037| Best HMM Match : Xan_ur_permease (HMM E-Value=2e-07)
Length = 445
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 210 EQKPEEARKG-NVTYGIDDTPPWYLCIFMALQHYLTMI 320
E + E+ R +TY +D+ PPW + + LT I
Sbjct: 22 EIQAEKRRNAFGLTYAVDENPPWTVALITIFSQMLTNI 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,191,586
Number of Sequences: 59808
Number of extensions: 408768
Number of successful extensions: 978
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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