Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g24f
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78410-3|CAB01641.1|  555|Caenorhabditis elegans Hypothetical pr...    54   1e-07
Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical pr...    53   2e-07
AF100669-2|AAK39264.1|  546|Caenorhabditis elegans Hypothetical ...    49   3e-06
Z82282-5|CAB05270.1|  555|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AC024753-11|AAF60461.1|  369|Caenorhabditis elegans Hypothetical...    32   0.35 
Z81489-10|CAB04004.2|  337|Caenorhabditis elegans Hypothetical p...    30   1.1  
AF016686-5|ABO16458.1|  407|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL022289-4|CAA18376.1|  511|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z78410-3|CAB01641.1|  555|Caenorhabditis elegans Hypothetical
           protein C51E3.6 protein.
          Length = 555

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
 Frame = +3

Query: 261 DTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPD-RSNIISTMIFVTGLITW 437
           DTPP  + +   LQ  +  + A++ +P I+  ++C   +    R  +IS+    +G+ T 
Sbjct: 25  DTPPIGIALLYGLQQVMVCVSALLTVPLIMADSMCPGSSIAVLRQTLISSTFVSSGISTI 84

Query: 438 LQATFGCRLPIVQGGTISFLVPTLAILNLPAWKCPEEE 551
           +Q  FG RL ++QG   +++      ++LP   C   E
Sbjct: 85  IQTLFGMRLALLQGTAFAYVPSVQGFMSLPENTCNATE 122


>Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical
           protein T07G12.2 protein.
          Length = 544

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +3

Query: 237 GNVTYGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCM-EETDPDRSNIISTMI 413
           G++ + ++D P      F  LQ  L  I A++  P+ +   LC   ET   R  +I+   
Sbjct: 6   GDLHFHVNDVPHKSAIFFFGLQQMLVCISALLVTPYFVSNLLCAGAETTEVRVQLIAATF 65

Query: 414 FVTGLITWLQATFGCRLPIVQGGTISF 494
             +G+ T LQ TFG RL I+ G + +F
Sbjct: 66  ISSGIATILQTTFGLRLAILHGPSFAF 92


>AF100669-2|AAK39264.1|  546|Caenorhabditis elegans Hypothetical
           protein R11E3.2 protein.
          Length = 546

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = +3

Query: 225 EARKGNVTYGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPD-RSNII 401
           E ++  + + ++D P     + +  Q  +  I  ++ IP+++   +C  + + + R  +I
Sbjct: 3   EEKEDELVHHVNDIPSIPTILLIGFQQMMICISMLLVIPYMMSDMVCPGDKETEIRVQLI 62

Query: 402 STMIFVTGLITWLQATFGCRLPIVQGGTISFL 497
           S      G+ T LQ TFG RL I+ G + ++L
Sbjct: 63  SASFVTAGIATILQTTFGMRLAILHGPSFAYL 94


>Z82282-5|CAB05270.1|  555|Caenorhabditis elegans Hypothetical
           protein T07G12.5 protein.
          Length = 555

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = +3

Query: 249 YGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCM-EETDPDRSNIISTMIFVTG 425
           + +++ P     +   LQ  +  + +++ IP+++   LC  ++    R  +IS     +G
Sbjct: 6   FHVNEIPSPPSIMLFGLQQMMICLSSLLVIPYVVSDMLCAGDQAMEIRVQLISATFVTSG 65

Query: 426 LITWLQATFGCRLPIVQGGTISFL 497
           + T LQ TFG RL I+ G + +FL
Sbjct: 66  IATILQTTFGMRLSILHGPSFAFL 89


>AC024753-11|AAF60461.1|  369|Caenorhabditis elegans Hypothetical
           protein Y23H5B.1 protein.
          Length = 369

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 251 IRDIAFACLLWFLFTSYIIDALRTNQIILTVNFTHYYYANTY 126
           +R +   CL W +F SY +  L T  II T+ F HY+Y   Y
Sbjct: 279 LRRLTTFCL-WMMFGSYSV--LVTVSIIKTIYFNHYFYIIQY 317


>Z81489-10|CAB04004.2|  337|Caenorhabditis elegans Hypothetical
           protein C55A1.8 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 285 IFMALQHYLTMIGAIVAIPFILCPALCMEETDP 383
           I +++ +++  IG + A+P +  PA C++  +P
Sbjct: 152 IILSVIYFIIFIGFVAALPHVQAPAACLQALEP 184


>AF016686-5|ABO16458.1|  407|Caenorhabditis elegans Hypothetical
           protein R07C3.7 protein.
          Length = 407

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 2   VDNLKCDCRNIIKLPQSLTLKL 67
           V NLK D R I+++P+SL LK+
Sbjct: 218 VKNLKIDSRGILRIPKSLNLKV 239


>Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical
           protein W07G1.2 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 153 YSLLLCKYICVYSYPFNLNITIVSHMFEISFNVKLCGNFMIL 28
           Y +L C YIC+    F+ N+T +     + +     G+ MIL
Sbjct: 46  YFVLKCAYICLKIRVFHWNLTCLIFSCSVQWFETFIGSLMIL 87


>AL022289-4|CAA18376.1|  511|Caenorhabditis elegans Hypothetical
           protein ZK1225.5 protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 174 NHIDSQFYSLLLCKYICVYSYPFNLNITIVSHMFEISFNVKLCGNFMIL 28
           NH  +Q  +L L +    ++Y F  +  I+  + +I+F  K+CG   +L
Sbjct: 60  NH-SAQLVALHLLRQSSNHNYKFQESADILYSLMDINFEGKICGGMEML 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,059,291
Number of Sequences: 27780
Number of extensions: 299515
Number of successful extensions: 814
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)