Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g24f
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.1  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 375 FPPCREPGRG*TGSRQWPQS 316
           F P R PG G  G R +P+S
Sbjct: 52  FEPRRNPGPGSKGPRDFPRS 71


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -3

Query: 174 NHIDSQFYSLLLCKYICVYSYPFNLNITIVSHMFE 70
           NH  S+ +    C Y CV     N ++   S++++
Sbjct: 10  NHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQ 44


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +3

Query: 297 LQHYLTMIGAIVAIPFILCPALCMEETD 380
           + +  + +G I+ I  + C  LC E+ +
Sbjct: 1   MHNICSRLGRILLISAVFCVGLCSEDEE 28


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 301 CKAMNIQRYQGGVSSI 254
           CKA N + Y+GG  ++
Sbjct: 565 CKATNEETYRGGKGAL 580


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 301 CKAMNIQRYQGGVSSI 254
           CKA N + Y+GG  ++
Sbjct: 565 CKATNEETYRGGKGAL 580


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 301 CKAMNIQRYQGGVSSI 254
           CKA N + Y+GG  ++
Sbjct: 565 CKATNEETYRGGKGAL 580


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,599
Number of Sequences: 438
Number of extensions: 3809
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)