Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g23f
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    34   0.015
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    31   0.10 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.55 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.55 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   0.72 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   2.2  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   2.9  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   2.9  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   6.7  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   8.9  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.9  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   8.9  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 800

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 37/175 (21%), Positives = 75/175 (42%)
 Frame = +1

Query: 97   IPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTP 276
            +P + T    S++TI+SS+P+T+  +   +  T      +S    +    TT  T  ST 
Sbjct: 502  VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STS 560

Query: 277  INFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATART 456
            + + S  P TSS      S+ ++S     + CT++T      ++++ +T    P +T+ +
Sbjct: 561  VPYTS-TPVTSSNYTISSSTPVTSTPVTTTNCTTST------SVLYTSTPITSPNSTSSS 613

Query: 457  RQARESAGS*SLCGXXXXXXXXXXXLNVTNTWYWESALTGTATIWPSESTASIVS 621
                    +  + G           + +T+T    +  T + +I  S S+ +  S
Sbjct: 614  STQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSS 668


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +3

Query: 120 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 287
           L E   +  V  D +S  E  K KH  + + +KS + ++   K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169

Query: 288 LQGSKD 305
            +  K+
Sbjct: 170 SKYIKE 175


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 471 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 581
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 37/130 (28%), Positives = 56/130 (43%)
 Frame = +1

Query: 103 TSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPIN 282
           +SLT+   +S ++ASSS  T+  L  +SI +    + S   S      TT  +  S+  N
Sbjct: 107 SSLTSSSATSSSLASSST-TSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTN 165

Query: 283 FGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQ 462
             + A  TSS   S LSS  +S     S   S++++         AT + L +  A    
Sbjct: 166 STTSATPTSSATSSSLSSTAASNSATSSSLASSSLNS---TTSATATSSSLSSTAASNSA 222

Query: 463 ARESAGS*SL 492
              S  S SL
Sbjct: 223 TSSSLASSSL 232



 Score = 26.2 bits (55), Expect = 3.8
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +1

Query: 97  IPTSLTTFWRSSFTIASSSPITTVRLKRA-SIYTRRRRAKSSQMS*TN*YETTR*TAWST 273
           +PTS  TF  S F   S  P ++     + S         SS  + T+   T+   + ST
Sbjct: 677 VPTS--TFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTS---SVST 731

Query: 274 PINFGSRAPRTSSGIVSQLSSDLSS 348
           P++  S  P + S   S+LSS L+S
Sbjct: 732 PLSNSSAYPSSGSSTFSRLSSTLTS 756


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 374 VHKLNRVFGEDKSELNWETIPDDVL 300
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 129 QLYNSVVVADYDSAVEKSKHLYEEKKS 209
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 289 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 390
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 456 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 572
           K SP+V+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 319 VSQLSSDLSSPKTRLSLCTSATV 387
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 201 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 293
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 547  TWYWESALTGTATIWPSESTASIVS 621
            T Y+ +   G ATI PS  TASI+S
Sbjct: 1217 TLYYTTLGIGIATISPSIGTASIIS 1241


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 512 DLVVLPQSD*LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVA 378
           DLV+L   D +PAD R      + +  S +   N   ++ SE ++
Sbjct: 140 DLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAIS 184


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 389  ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL 279
            E V  +H L+  F ED+ E   E I  DV  A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 375 KRDGLALTLSNDVQGDDGRPAYGD 446
           K++G+  +  ND  G++G  AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,033
Number of Sequences: 5004
Number of extensions: 42899
Number of successful extensions: 197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)