Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g23f
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical p... 30 1.2
Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical p... 30 1.2
Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 30 1.5
U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical pr... 29 2.7
U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical pr... 28 6.2
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 28 6.2
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 28 6.2
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 28 6.2
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 27 8.2
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 27 8.2
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 27 8.2
>Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical
protein ZK1320.12b protein.
Length = 497
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 156 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 266
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical
protein ZK1320.12a protein.
Length = 495
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 156 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 266
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical
protein F18A11.1 protein.
Length = 485
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 213 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 389
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 213 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 389
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical
protein T12A2.15b protein.
Length = 222
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 444 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 542
D KD+ +P VS KL+AL N +V+ K T +N
Sbjct: 120 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 152
>U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical
protein T12A2.15a protein.
Length = 713
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 444 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 542
D KD+ +P VS KL+AL N +V+ K T +N
Sbjct: 611 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 643
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 283 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 390
FG APRT SG + Q S++L S+PKT A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182
>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
protein C44H9.4 protein.
Length = 1099
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 435 AYGDGKDKTSPRVSWKLIALWENNK---VYFKILNTERNQYLVLGVGTNWNGDH 587
++G + PR ++ I+ + + YF++L+ E N+Y+++ N +G H
Sbjct: 129 SWGPNFNSPKPRQVFRDISTYSYERGIRAYFRVLSAEDNKYILIACHANLHGLH 182
>Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical
protein C38C10.3 protein.
Length = 301
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 295 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 390
A + SSG+VSQ+SS SS + R +L ++ S
Sbjct: 91 AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.9 bits (59), Expect = 6.2
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 36 PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 203
P +K +V LC+ +LY + S + + EQLY +SV A + ++ + + EE
Sbjct: 922 PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981
Query: 204 KSEVITNVVNKLIRNNKMNCMEYAY 278
+ E N++N + C+E AY
Sbjct: 982 EPETYHNILN--VMPEGQACLEKAY 1004
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.9 bits (59), Expect = 6.2
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 36 PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 203
P +K +V LC+ +LY + S + + EQLY +SV A + ++ + + EE
Sbjct: 922 PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981
Query: 204 KSEVITNVVNKLIRNNKMNCMEYAY 278
+ E N++N + C+E AY
Sbjct: 982 EPETYHNILN--VMPEGQACLEKAY 1004
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 153 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFP 326
A Y S +K + EEK E I N + R K + ++ L+ S+D+ RDC
Sbjct: 29 ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87
Query: 327 VEFRLIFA 350
++ FA
Sbjct: 88 IDMDAYFA 95
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 59 NYSGLHLWSVESCVLPKNE 3
NY+ LH W +ES + P N+
Sbjct: 60 NYNNLHYWLIESQLTPSND 78
>Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical
protein F36F2.3b protein.
Length = 363
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 130 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPI-NFGSRAPRT 306
SFT+ASS P T +R+++ S + + + + S + R T + + G + ++
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS-----KRDRRKKDETDVESIGEKEKKS 339
Query: 307 SSGIVSQLSSDLSSPKTRL 363
SS V + S D+ T++
Sbjct: 340 SSRKVPKESVDVKHKSTKI 358
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
F36F2.3a protein.
Length = 1128
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 130 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPI-NFGSRAPRT 306
SFT+ASS P T +R+++ S + + + + S + R T + + G + ++
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS-----KRDRRKKDETDVESIGEKEKKS 1104
Query: 307 SSGIVSQLSSDLSSPKTRL 363
SS V + S D+ T++
Sbjct: 1105 SSRKVPKESVDVKHKSTKI 1123
>Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical
protein F43A11.3 protein.
Length = 319
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 261 CMEYAYQLWL---QGSKDIVRDCFPVEFRLIFA 350
C+ Y Y+L + +KD+ RDCF F + FA
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFA 171
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 59 NYSGLHLWSVESCVLPKNE 3
NY+ LH W +ES + P N+
Sbjct: 60 NYNNLHYWLIESQLTPSND 78
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 59 NYSGLHLWSVESCVLPKNE 3
NY+ LH W +ES + P N+
Sbjct: 60 NYNNLHYWLIESQLTPSND 78
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 27.5 bits (58), Expect = 8.2
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Frame = +1
Query: 4 SFLGNTQDSTLQ-R*SPL*LFYVFSWH--LCMLQIPTSLTTFWRSSFTIASSSPITTVRL 174
+F N + TL+ P + VF W+ L + S ++ F + P TT
Sbjct: 174 TFSNNLEPDTLRLHPDPAIISRVFEWYSNATNLYVTPSQGVYYIQYFRADLNEPTTTSTA 233
Query: 175 KRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPINFGSRAPRTSSGIVSQLSSDLSSP 351
A T A +S + TN TT ST + +P+TSS VS +S SSP
Sbjct: 234 YAAPSST----ASTSTPAPTNLPTTTGAPTNSTTNPPTATSPKTSSQPVSSSTSSTSSP 288
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,790,159
Number of Sequences: 27780
Number of extensions: 242303
Number of successful extensions: 920
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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