Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g23f
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.12 
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    31   0.82 
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr...    30   1.1  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    29   3.3  
At5g63450.1 68418.m07965 cytochrome P450, putative                     28   5.8  
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica...    27   7.7  
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ...    27   7.7  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    27   7.7  
At1g59077.1 68414.m06670 hypothetical protein                          27   7.7  
At1g58766.1 68414.m06659 hypothetical protein                          27   7.7  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 27  LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 206
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 207 SEVITNV 227
             +  N+
Sbjct: 214 GSIAPNL 220


>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 298 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 390
           PR  +G  S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
           protein similar to CHY1 [gi:8572760]; contains Pfam
           profile PF00388 enoyl-CoA hydratase/isomerase family
           protein
          Length = 387

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
 Frame = +3

Query: 207 SEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRL---IFAENAIKLMYK 377
           +E IT V+  L R++    ++   Q   +G K  + DC   EFRL   I  +     MY 
Sbjct: 263 NEWITPVIKGLKRSSPTG-LKIVLQSIREGRKQTLSDCLKKEFRLTLNILRKTISPDMY- 320

Query: 378 RDGL-ALTLSNDVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERNQY 548
            +G+ ALT+  D       PA  D  D       +K   L+E++ +  +I  TE N++
Sbjct: 321 -EGIRALTIDKD-NSPKWNPATLDEVDDEKINSVFK---LFEDDDIELQIPETEENRW 373


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +1

Query: 10   LGNTQDSTLQR*SPL*LFYVFSWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 168
            LG    +T+Q    + +    +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1065 LGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 447 GKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVG 566
           G+D TS  ++W    L +N+ V  KIL+  RN+   LG+G
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344


>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
           to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
          Length = 802

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 528 NTERNQYLVLGVGTNWNGDHMAF 596
           N   N  L L VGTN NG H AF
Sbjct: 270 NHHYNSSLELAVGTNNNGGHFAF 292


>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
           Cytochrome P450 94A1  (P450-dependent fatty acid
           omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
           Pfam profile: PF00067 cytochrome P450
          Length = 506

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 447 GKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVG 566
           G+D TS  ++W    L EN+ V  KIL  E +  + LG+G
Sbjct: 304 GRDTTSAAMTWLFWLLTENDDVERKILE-EVDPLVSLGLG 342


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 120  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 227
            LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 120 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 227
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 120 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 227
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,257,917
Number of Sequences: 28952
Number of extensions: 230917
Number of successful extensions: 928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)