Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g21r
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   2.1  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   3.7  
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    26   6.5  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   8.6  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 631  YIL*DFKMKYYYFFCFVLISLFV-YQNTLIK 720
            ++L +F   YYY+F F+L  +++ Y N  ++
Sbjct: 967  FVLFNFSQPYYYYFSFLLAEMYLRYGNPSLR 997


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 126 ATLQNILLR*HNANRNLFIQKHNNTILIKKTLS 224
           +T Q IL    N N N+F   HN T+ +  TL+
Sbjct: 431 STNQIILKNQENINNNMFGSIHNTTLSLNSTLN 463


>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 99  HVA-DFG*NMATLQNILLR*HNANRNLFIQKHNNT 200
           H+A D    +  L N LL  H+A   + I +HNNT
Sbjct: 118 HLAHDIQLKLDELGNALLNDHSAGPQIVISEHNNT 152


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 174 LFIQKHNNTILIKKTLSNLNG 236
           L ++ HN   L+K T SNL+G
Sbjct: 470 LIVKNHNQLSLLKCTFSNLDG 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,558
Number of Sequences: 5004
Number of extensions: 45435
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)