Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g21r
         (741 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071183-1|AAL48805.1|  190|Drosophila melanogaster RE23430p pro...    29   8.8  
AE014298-3147|AAN09679.1|  190|Drosophila melanogaster CG12565-P...    29   8.8  
AE014298-3146|AAF50810.2|  190|Drosophila melanogaster CG12565-P...    29   8.8  

>AY071183-1|AAL48805.1|  190|Drosophila melanogaster RE23430p
           protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 256 ISLSYFFPLRLLKVFFISIVLLCFCINRFLFAL-CYLSRIFC 134
           +  S   P RL+ V F+S  LL FC     F L C+     C
Sbjct: 148 VEFSTSVPFRLVPVRFVSFQLLSFCPRSLSFCLICHFKCTIC 189


>AE014298-3147|AAN09679.1|  190|Drosophila melanogaster CG12565-PB,
           isoform B protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 256 ISLSYFFPLRLLKVFFISIVLLCFCINRFLFAL-CYLSRIFC 134
           +  S   P RL+ V F+S  LL FC     F L C+     C
Sbjct: 148 VEFSTSVPFRLVPVRFVSFQLLSFCPRSLSFCLICHFKCTIC 189


>AE014298-3146|AAF50810.2|  190|Drosophila melanogaster CG12565-PA,
           isoform A protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 256 ISLSYFFPLRLLKVFFISIVLLCFCINRFLFAL-CYLSRIFC 134
           +  S   P RL+ V F+S  LL FC     F L C+     C
Sbjct: 148 VEFSTSVPFRLVPVRFVSFQLLSFCPRSLSFCLICHFKCTIC 189


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,397,630
Number of Sequences: 53049
Number of extensions: 418631
Number of successful extensions: 881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)