Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g21f
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44) 176 1e-44
SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088) 57 1e-08
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 31 0.81
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15) 29 2.5
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7) 28 5.7
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 5.7
SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2) 28 7.6
SB_45400| Best HMM Match : MAM (HMM E-Value=0) 28 7.6
SB_7842| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
Length = 210
Score = 176 bits (429), Expect = 1e-44
Identities = 76/148 (51%), Positives = 106/148 (71%)
Frame = +2
Query: 149 DNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFV 328
+N+E L +K+ +T E+K V +LY+FLGLV LYL+FG+GA+LI +GF
Sbjct: 13 ENLENWLEEKNY-FTDALGKVEEKTKVKKLYLFLGLVGVFSLYLIFGYGADLIVTVLGFA 71
Query: 329 YPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCY 508
YPAY S+KA+ES QKDDDT+WL YWVV+A F+IVE+FSD ++ WFPLY+L K IF+ WC
Sbjct: 72 YPAYQSVKAVESVQKDDDTQWLIYWVVFASFNIVEFFSDILLSWFPLYFLTKLIFLGWCM 131
Query: 509 LPTEYNGSLVIYYRIIRPYYQKHHGRID 592
P +NGS +Y ++I+P+ +H +ID
Sbjct: 132 APVSWNGSDTLYQKVIKPFVLRHQSQID 159
>SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)
Length = 110
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +2
Query: 233 RLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYW 403
R+ + L +V FT LY+ G+ A CN I V+P Y S+ A+E+P + TKWL YW
Sbjct: 55 RIQVLL-MVLFTLLYVAEGYAAACFCNVIAVVFPVYASISAIENPDYEIGTKWLMYW 110
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 327 TKPIELHINSAPKPNTKYKPVNATKPKKMYNLFTPTFCSA 208
T+P+ H S+P+P + + PVN T P TP +A
Sbjct: 225 TQPLSSHSGSSPQPGSAFSPVN-TPPNAQAQQMTPPSSAA 263
>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
Length = 1724
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 212 RLVQNISSMACFCRSDFVLCCLYTLVIWMPL 120
R ++NI + C S F LCC + L W+ L
Sbjct: 100 RTLENIRARRCMRTSAFGLCCRFILAHWVKL 130
>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 416 CFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIY 544
C ++V +G F +++ +C CY+P + NGS IY
Sbjct: 374 CVTVVHDPPFLKIGEFNIFYDKECTLEHVCYVPVQLNGSESIY 416
>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 830
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -2
Query: 405 TQYVSHFVSSSFCGDSRAFIDMYAGYTK 322
T +V HFV + FCG++R+ + + + +
Sbjct: 774 TAFVRHFVLARFCGENRSIVINFRSFNR 801
>SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -2
Query: 486 HFNSQYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTKPIELH 307
+F+++ N T +EKYST + Y+T+ + + + S + Y+ TK E +
Sbjct: 208 NFSTKATENYSTKATEKYSTKASENYSTKATEKYSTKAAENYSTKATEKYS--TKATEKY 265
Query: 306 INSAPKP-NTKYKPVNATKPKKMYN 235
A + +TK +TK K Y+
Sbjct: 266 STKATENFSTKATENYSTKATKNYS 290
>SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)
Length = 483
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 338 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 490
Y+ + + P+K D WL + + + YF + I +F WL KCI
Sbjct: 308 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 356
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1
Query: 568 VVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVLHDRKTGVHHPICKP 389
+V +VV H+ PVV R H+ + V +P ++H T V HP +P
Sbjct: 1381 IVIHRPSVVLHQAPVVVHRPAVVYHQPPV---VVHQPPPLVHQPIIHSHDTYVSHPFFEP 1437
Query: 388 F 386
F
Sbjct: 1438 F 1438
>SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 338 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 490
Y+ + + P+K D WL + + + YF + I +F WL KCI
Sbjct: 122 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 170
>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4482
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 60 NYLTPFTLEDGHDLTRQLTF 1
N + PF++E+ HDLT+Q F
Sbjct: 1986 NQMKPFSVEEFHDLTKQFGF 2005
>SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2)
Length = 273
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = -2
Query: 501 QITKMHFNSQYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTK 322
Q+ + N N+ K KYS+ +Q Y ++ VSS F F Y T+
Sbjct: 137 QMVEFVITGNPNENKTHGKWPKYSSENRQVYQAAFIESGVSSDFLAQKADFWTRYLPQTE 196
>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
Length = 257
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 485 CIFVIWCYLPTEYNGSLVIYYRIIRP 562
C+ + CY + YN + +YY +RP
Sbjct: 162 CVEAVGCYRDSGYNRAFPVYYADLRP 187
>SB_7842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 107 LKDRTMASKLQEYKDNIEQSLNDKSKPWTKYFELAE-QKVGVNRLYIFLG 253
LKD+T ASK E + EQS+ K + K+ L + Q +Y F G
Sbjct: 43 LKDKTKASKATEKPEIFEQSVMGKVQTNIKFHNLEDRQDYRDESVYTFCG 92
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,965,725
Number of Sequences: 59808
Number of extensions: 469166
Number of successful extensions: 1679
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -