Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g21f
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024201-6|AAF36016.1| 183|Caenorhabditis elegans Hypothetical ... 169 1e-42
Z81113-6|CAD21647.2| 295|Caenorhabditis elegans Hypothetical pr... 127 6e-30
AF045646-11|AAK29829.1| 205|Caenorhabditis elegans Hypothetical... 114 4e-26
U28412-5|AAC46595.1| 229|Caenorhabditis elegans Hypothetical pr... 79 2e-15
AC024748-4|AAF60410.1| 251|Caenorhabditis elegans Hypothetical ... 56 2e-08
AL110490-5|CAB54441.1| 424|Caenorhabditis elegans Hypothetical ... 42 3e-04
L16559-7|AAA27930.1| 161|Caenorhabditis elegans Hypothetical pr... 39 0.003
AF077541-5|AAC64629.1| 380|Caenorhabditis elegans Hypothetical ... 38 0.008
Z48583-1|CAA88470.1| 389|Caenorhabditis elegans Hypothetical pr... 31 0.54
AF016678-11|AAB66147.1| 343|Caenorhabditis elegans Serpentine r... 31 0.54
Z83128-7|CAB05634.2| 243|Caenorhabditis elegans Hypothetical pr... 31 0.94
U97403-3|AAB52473.1| 142|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF016678-7|AAB66154.3| 340|Caenorhabditis elegans Serpentine re... 30 1.6
AF078157-18|AAG24080.1| 338|Caenorhabditis elegans Seven tm rec... 29 2.2
Z81533-5|CAB04337.1| 342|Caenorhabditis elegans Hypothetical pr... 28 6.6
AL132951-1|CAC44310.2| 707|Caenorhabditis elegans Hypothetical ... 28 6.6
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical... 28 6.6
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ... 28 6.6
Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical p... 27 8.7
Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z81137-10|CAB03470.2| 232|Caenorhabditis elegans Hypothetical p... 27 8.7
U97407-1|AAB52478.2| 411|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical... 27 8.7
AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear recep... 27 8.7
AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear recep... 27 8.7
AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear recep... 27 8.7
>AC024201-6|AAF36016.1| 183|Caenorhabditis elegans Hypothetical
protein Y71F9B.3 protein.
Length = 183
Score = 169 bits (411), Expect = 1e-42
Identities = 74/154 (48%), Positives = 110/154 (71%)
Frame = +2
Query: 131 KLQEYKDNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELIC 310
++Q+ D++++ L++ S T EQK GV RL++ LG+V LYL+FG A+L+C
Sbjct: 6 QVQKVLDDVDKQLHEPSTV-TNVLATVEQKTGVKRLHLVLGVVGLQALYLIFGHSAQLVC 64
Query: 311 NSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 490
N +GFVYPAYMS+KA+ES K+DDT+WLTYWV++A S+VE+FS IV FP+YWL K I
Sbjct: 65 NFMGFVYPAYMSIKAIESSNKEDDTQWLTYWVIFAILSVVEFFSVQIVAVFPVYWLFKSI 124
Query: 491 FVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRID 592
F+++ YLP+ + G+ +Y+R ++P +H G ID
Sbjct: 125 FLLYLYLPS-FLGAAKLYHRFVKPVAARHSGSID 157
>Z81113-6|CAD21647.2| 295|Caenorhabditis elegans Hypothetical
protein T03F6.6 protein.
Length = 295
Score = 127 bits (307), Expect = 6e-30
Identities = 52/118 (44%), Positives = 80/118 (67%)
Frame = +2
Query: 212 EQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKW 391
E G+ R + GL+ +Y++ G GAE +CN IG YPAY+S+KA+ + DDDT W
Sbjct: 49 EDATGLKREMLAYGLIGLNCVYMIIGSGAEFVCNLIGVAYPAYVSVKAIRTEGTDDDTMW 108
Query: 392 LTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPY 565
L YW V+ FSI+++F+ I+ +FP+YW+ K F+++ YLP E +GS VIY+++I P+
Sbjct: 109 LIYWTVFGAFSIIDFFAASIMSYFPIYWVAKAAFLLYLYLP-ETHGSHVIYHQLIDPF 165
>AF045646-11|AAK29829.1| 205|Caenorhabditis elegans Hypothetical
protein F56B3.6 protein.
Length = 205
Score = 114 bits (275), Expect = 4e-26
Identities = 51/108 (47%), Positives = 71/108 (65%)
Frame = +2
Query: 239 YIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYAC 418
Y GL+AF +LVFG A L+CN IGF YP Y S+KA+ SP DDDT WL YW +A
Sbjct: 84 YAAFGLIAF---FLVFGSVARLLCNLIGFGYPTYASVKAIRSPGGDDDTVWLIYWTCFAV 140
Query: 419 FSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRP 562
+V++FS+ I+ WFP Y++ K F+++ YLP + GS++ Y I+ P
Sbjct: 141 LYLVDFFSEAILSWFPFYYIAKACFLVYLYLP-QTQGSVMFYETIVDP 187
>U28412-5|AAC46595.1| 229|Caenorhabditis elegans Hypothetical
protein T19C3.4 protein.
Length = 229
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Frame = +2
Query: 296 AELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVG-WFPLY 472
+ L+ + G +YPAY S KA+ + + KW+ YW+V+A +S +E D ++ WFP Y
Sbjct: 6 SRLLIITAGTLYPAYRSYKAVRTKDTREYVKWMMYWIVFAIYSFLENLLDLVLAFWFPFY 65
Query: 473 WLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRID---DMANTDPMNDIIKDLNE 643
+ LK +F+ W P G+ ++Y + + P +H ID + A ++ N +++ ++
Sbjct: 66 FQLKIVFIFWLLSPWT-KGASILYRKWVHPTLNRHEKDIDALLESAKSESYNQLMRIGSK 124
Query: 644 SM 649
S+
Sbjct: 125 SL 126
>AC024748-4|AAF60410.1| 251|Caenorhabditis elegans Hypothetical
protein Y110A2AR.1 protein.
Length = 251
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 290 FGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYF-SDFIVGWF- 463
F A + N IG V P S K L+ P K + + YW +Y F IV++F S F V F
Sbjct: 3 FLARGLSNLIGIVAPVIGSFKVLKKPTKPRLIECMHYWTIYGSFLIVDWFLSTFYVSCFI 62
Query: 464 PLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRIDDMA 601
P Y F + +P + V+Y + + P+ +K+ RID+++
Sbjct: 63 PFYDFFILTFTVLMAIP-HIGFASVLYTKFLAPFLRKYERRIDNIS 107
>AL110490-5|CAB54441.1| 424|Caenorhabditis elegans Hypothetical
protein Y48B6A.5 protein.
Length = 424
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +2
Query: 242 IFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQ--KDDDTKWLTYWVVYA 415
IF+ + LYL+ G A+++C ++ V PA S K L +P+ K+ L YW +Y
Sbjct: 74 IFVMTMISVALYLIEGEHAQVVCTALTSVPPAIFSYKVLMNPKSSKEGYHSILFYWTLYG 133
Query: 416 CFSIVEYF 439
++++ F
Sbjct: 134 ILAVIDQF 141
>L16559-7|AAA27930.1| 161|Caenorhabditis elegans Hypothetical
protein C06E1.1 protein.
Length = 161
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +2
Query: 122 MASKLQEYKDNIEQSLNDKSKP-WT-KYFELAEQKVGVNRLYIFLGLVAFTGLYLVFGFG 295
MA+ + + + I + L ++K W K F AE+ G+ R I +Y++ G
Sbjct: 1 MATIIAKIESKINEYLKARNKEDWKEKTFTQAEKFSGIPRERIVSMAFLMLSIYVLLGNF 60
Query: 296 AELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEY 436
L + I +P S L QK+ L YW++YA S+ +Y
Sbjct: 61 LPLFSHIICIFWPVKESFMILRQ-QKNPSDNILLYWILYAMVSLFDY 106
>AF077541-5|AAC64629.1| 380|Caenorhabditis elegans Hypothetical
protein Y23H5A.4 protein.
Length = 380
Score = 37.5 bits (83), Expect = 0.008
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +2
Query: 212 EQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDD--T 385
E VG L I L LYL+ G A+ IC ++ V PA S + L + D
Sbjct: 52 EGLVGTKELVILSALTMC--LYLINGEYAQTICTALTSVPPALFSYRVLTNQMTDKQGYH 109
Query: 386 KWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKC 487
L YW +Y ++++ F+ G Y L KC
Sbjct: 110 SILFYWTLYGLTALIDQFAGTAQG----YNLCKC 139
>Z48583-1|CAA88470.1| 389|Caenorhabditis elegans Hypothetical
protein F54B3.2 protein.
Length = 389
Score = 31.5 bits (68), Expect = 0.54
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 430 GVLFRFHRRLVSIVLAVKVHLRDLVLPAD*IQRVPRDLLPYHSS--LLPEASWSYR*YGQ 603
GV F FHRR S+V ++ + + +L + L+PY + LP ASW YR G+
Sbjct: 182 GVQFEFHRR--SVVSKIQKTI-EFMLKLNNQTSTYSQLIPYWNPTIFLPPASWQYRKLGE 238
Query: 604 HR 609
+
Sbjct: 239 EK 240
>AF016678-11|AAB66147.1| 343|Caenorhabditis elegans Serpentine
receptor, class i protein46 protein.
Length = 343
Score = 31.5 bits (68), Expect = 0.54
Identities = 22/114 (19%), Positives = 51/114 (44%)
Frame = +2
Query: 248 LGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSI 427
+G++ FTG+++VF A +++ + A ++ A ++ K L + +C +
Sbjct: 209 VGVMGFTGIFVVFQAIAMTTMDTMKMLKGARKTISAQSYDRQRSAMKSLIAQFLASCLLV 268
Query: 428 VEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRI 589
+ S +++ +P+ + + + + T + + VI PY GRI
Sbjct: 269 LPAASFYVISVYPINYGQEIVNISMAIFATRSSVNAVILVATTPPYRAFLFGRI 322
>Z83128-7|CAB05634.2| 243|Caenorhabditis elegans Hypothetical
protein W01D2.3 protein.
Length = 243
Score = 30.7 bits (66), Expect = 0.94
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Frame = +2
Query: 200 FELAEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDD 379
F E+ G R + F G + ++ I + + P +M++ A+ S +
Sbjct: 88 FREIERVFGRRREHCFYGALGVLLTLVLLNDAVGAITAFMTLIIPTFMTVTAISSTSSYE 147
Query: 380 DTKWLT--------YWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWC 505
+ +L YW VYA F E F ++ W L + IF+ C
Sbjct: 148 NPSFLKNHQDFFVRYWTVYAVFVTGESFLSSLIHWD--LRLFRLIFMSMC 195
>U97403-3|AAB52473.1| 142|Caenorhabditis elegans Hypothetical
protein T10E9.6 protein.
Length = 142
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 398 YWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLP 514
YW ++ F Y D I+ + PLY+++K I +LP
Sbjct: 91 YWTIFGFF----YLFDRILEYIPLYYIIKLAVFIGLFLP 125
>AF016678-7|AAB66154.3| 340|Caenorhabditis elegans Serpentine
receptor, class i protein45 protein.
Length = 340
Score = 29.9 bits (64), Expect = 1.6
Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Frame = +2
Query: 236 LYIFL-GLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVY 412
+Y+FL G+ F G++ VF A +++ + A ++ A ++ + LT +
Sbjct: 204 IYMFLVGVCGFLGIFGVFQVIAMTTVDTMKMLKGARRTISAQSYNRQKSALRSLTAQFLA 263
Query: 413 ACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRID 592
+ ++ S F++ +P+ + I V T + + VI PY GR+
Sbjct: 264 STLMVLPASSFFVIMTYPIKYGQDIINVSMAIFATRSSVNAVILVVTTPPYRAFLFGRV- 322
Query: 593 DMANTDPMNDIIKDLNES 646
M+N + ++ +N +
Sbjct: 323 -MSNRQKPSTVVVSINHT 339
>AF078157-18|AAG24080.1| 338|Caenorhabditis elegans Seven tm
receptor protein 28 protein.
Length = 338
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 401 WVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV--IWCY 508
++ AC +S GW +YWLL C+ + +W Y
Sbjct: 110 FIYRACVLARPIWSKIFDGWKLIYWLLYCLIIGGLWSY 147
>Z81533-5|CAB04337.1| 342|Caenorhabditis elegans Hypothetical
protein F36G9.8 protein.
Length = 342
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 258 TKPKKMYNLFTPTFCSASSKYFVHGLLLSFRLCSMLSLYSCNLDAIVRSFSG*P 97
T P ++ ++ FC LL F++CSM S + N+ + FS P
Sbjct: 21 TTPVNIFGVYVILFCQTKQLASYRWHLLVFQVCSMTSDFLLNIGMLPVIFSPFP 74
>AL132951-1|CAC44310.2| 707|Caenorhabditis elegans Hypothetical
protein Y67H2A.1 protein.
Length = 707
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 363 DSRAFIDMYAGYTKPIELHINSAPKPNTKYKPVNATKPK 247
DS DMYA LH + P P+ KY P N++ P+
Sbjct: 581 DSNPVYDMYADSVVAAILHAQANPVPD-KYLPSNSSFPQ 618
>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 455 GWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHG 583
GWFP+++ L CI + C L SL + + I+ KHHG
Sbjct: 1221 GWFPIFFELSCI-INRCKLDVR-TRSLTVMFEIM-----KHHG 1256
>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 455 GWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHG 583
GWFP+++ L CI + C L SL + + I+ KHHG
Sbjct: 1221 GWFPIFFELSCI-INRCKLDVR-TRSLTVMFEIM-----KHHG 1256
>Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = -2
Query: 177 LSFRLCSMLSLYSCNL--DAIVRSFSG*PNVNADRKLSGQ*NYLTPFT-LEDGH 25
+S++ +++S C+L D I+ S+ G +++ D+K+ N+ PF L+ GH
Sbjct: 169 VSYKEANIVSSKECDLVADWILNSYPGFADLHKDQKIILFRNFFLPFVILQGGH 222
>Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical
protein T02E9.3 protein.
Length = 763
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 321 PIELHINSAPK-PNTKYKPVNATKPKKMYNLF-TPTFCSASS 202
P + +N+ P PNTK P N T ++ LF P+ CS S
Sbjct: 516 PAMMAVNTPPATPNTKEAPTNCTSLLQVPRLFDCPSPCSVPS 557
>Z81137-10|CAB03470.2| 232|Caenorhabditis elegans Hypothetical
protein W02D9.2 protein.
Length = 232
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 290 FGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEY 436
F L+ SIGFV+ Y SM L Q D + L + V+ + +V +
Sbjct: 179 FPLRLLITSIGFVWSTYASMGFLAGCQ-PDKKRLLVIYPVFLFYFVVSW 226
>U97407-1|AAB52478.2| 411|Caenorhabditis elegans Hypothetical
protein C34G6.5 protein.
Length = 411
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 254 SLRKCTICSRRPFVRLVQNISSMACFCRSDF 162
S + CTIC +R F N S CFCR ++
Sbjct: 323 SRQPCTICQKRSF-----NNSMGVCFCRKNY 348
>AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = -2
Query: 177 LSFRLCSMLSLYSCNL--DAIVRSFSG*PNVNADRKLSGQ*NYLTPFT-LEDGH 25
+S++ +++S C+L D I+ S+ G +++ D+K+ N+ PF L+ GH
Sbjct: 169 VSYKEANIVSSKECDLVADWILNSYPGFADLHKDQKIILFRNFFLPFVILQGGH 222
>AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 388
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = -2
Query: 177 LSFRLCSMLSLYSCNL--DAIVRSFSG*PNVNADRKLSGQ*NYLTPFT-LEDGH 25
+S++ +++S C+L D I+ S+ G +++ D+K+ N+ PF L+ GH
Sbjct: 168 VSYKEANIVSSKECDLVADWILNSYPGFADLHKDQKIILFRNFFLPFVILQGGH 221
>AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 387
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = -2
Query: 177 LSFRLCSMLSLYSCNL--DAIVRSFSG*PNVNADRKLSGQ*NYLTPFT-LEDGH 25
+S++ +++S C+L D I+ S+ G +++ D+K+ N+ PF L+ GH
Sbjct: 167 VSYKEANIVSSKECDLVADWILNSYPGFADLHKDQKIILFRNFFLPFVILQGGH 220
>AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 383
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = -2
Query: 177 LSFRLCSMLSLYSCNL--DAIVRSFSG*PNVNADRKLSGQ*NYLTPFT-LEDGH 25
+S++ +++S C+L D I+ S+ G +++ D+K+ N+ PF L+ GH
Sbjct: 163 VSYKEANIVSSKECDLVADWILNSYPGFADLHKDQKIILFRNFFLPFVILQGGH 216
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,504,365
Number of Sequences: 27780
Number of extensions: 351955
Number of successful extensions: 1165
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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