Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g20f
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0800 - 7047425-7048253,7048340-7048927,7049050-7049268,704...    29   4.1  
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    29   4.1  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    29   4.1  
11_06_0224 + 21447875-21448944,21449465-21449624                       28   7.1  
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248...    27   9.4  
02_04_0131 - 20046033-20046505,20047140-20047233,20047343-200474...    27   9.4  

>11_01_0800 -
           7047425-7048253,7048340-7048927,7049050-7049268,
           7049398-7049518,7050593-7050983
          Length = 715

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
 Frame = +1

Query: 145 NCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTPWSTATSCGSATD--- 315
           +C TAS      +L+        K R    +    I  + R    W+   SCG+  D   
Sbjct: 579 DCATASDTTQIKLLFGAKGAVHIKGRCIGGERRFAIYRMERGVDKWTVKCSCGATDDDGE 638

Query: 316 RILSKSTSH 342
           R+LS  T H
Sbjct: 639 RMLSCDTCH 647


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 361 MMSLKLNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 254
           MM L + GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186


>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 152  VQFVLEVLVRRAHAVRG*FHDAGAGSEHAHCEHNEKFHFVRSLFRSLSRL 3
            +++  ++LV   H++    H       HA   ++ + HFV  +  SLSRL
Sbjct: 1836 IRYTKKILVEEGHSIPNMIHIFQLIVRHADLFYSCRAHFVPQMVNSLSRL 1885


>11_06_0224 + 21447875-21448944,21449465-21449624
          Length = 409

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 166 VRMLLYSLSSRSWLEGLMLSADSSTTPALAASTHIANTTRSFILLGAFS 20
           +R +L +L   +  + LML     T+PA+AA+  + N T  FI + A S
Sbjct: 133 LRFVLLALGGVTGFQALMLQGMKRTSPAIAAA--MPNLTPGFIFVVAAS 179


>06_03_1104 +
           27623632-27623795,27624052-27624175,27624316-27624832,
           27624943-27625073,27625161-27625567,27625690-27625963,
           27626195-27626814,27627424-27627859
          Length = 890

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 282 EYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGSTTNPSNERIA 452
           +YC    V +  D+  +   L   L + GN   ++  N +L  K+G+    SN  IA
Sbjct: 248 QYC----VASEMDVAVRVLKLYAALALCGNGAMVLLNNEDLMAKVGALLGKSNPSIA 300


>02_04_0131 -
           20046033-20046505,20047140-20047233,20047343-20047434,
           20047560-20047611,20047721-20047878,20048190-20048280,
           20048397-20049455
          Length = 672

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 105 ADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVV 245
           +DS+  +  +  D   N     DY+S+ R+S     QGQ  ++  +V
Sbjct: 110 SDSILAATDNTNDSADNCTRDVDYNSSGRRSTTSHDQGQHDVLSEIV 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,381,225
Number of Sequences: 37544
Number of extensions: 333139
Number of successful extensions: 991
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)