Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g20f
(635 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain... 35 0.052
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf... 30 1.1
At1g69390.1 68414.m07966 chloroplast division protein, putative ... 30 1.5
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea... 29 2.0
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea... 29 2.0
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR... 29 2.0
At1g49920.1 68414.m05598 zinc finger protein-related weak simila... 29 2.0
At5g66720.2 68418.m08411 5-azacytidine resistance protein -relat... 28 4.5
At5g66720.1 68418.m08410 5-azacytidine resistance protein -relat... 28 4.5
At5g10290.1 68418.m01194 leucine-rich repeat family protein / pr... 28 6.0
At4g21550.1 68417.m03113 transcriptional factor B3 family protei... 27 7.9
>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
Pfam profile PF04434: SWIM zinc finger
Length = 750
Score = 34.7 bits (76), Expect = 0.052
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 252 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 350
+++D + EY KL + +G D KYFPL+F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418
>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
profiles PF03108: MuDR family transposase, PF04434: SWIM
zinc finger
Length = 719
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 252 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 350
+++D + +Y KL + +G D K+FPL+F
Sbjct: 379 IVVDTKSLNGKYQLKLMIASGVDAANKFFPLAF 411
>At1g69390.1 68414.m07966 chloroplast division protein, putative
(MinE1) identical to chloroplast division protein
homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
Length = 229
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 69 VLAASAGVVELSADSMSPSNQDLEDKLYNSILTGDYD 179
VLA + G ELS SP+ Q++E LYN+I G +D
Sbjct: 70 VLARNTGDYELSP---SPAEQEIESFLYNAINMGFFD 103
>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 433
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 114 MSPSNQDLE-DKLY--NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRR 272
M NQ E +KL+ NS L+ Y ++ S ++E+Q + + QNV ++DK R
Sbjct: 288 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343
>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 434
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 114 MSPSNQDLE-DKLY--NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRR 272
M NQ E +KL+ NS L+ Y ++ S ++E+Q + + QNV ++DK R
Sbjct: 289 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344
>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1103
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 148 SLSSRSWLEGLMLSADSSTTPALAASTHIAN 56
S+S WLEG L DS T A HIAN
Sbjct: 1065 SVSFNPWLEGEALCVDSMITEQQDAQIHIAN 1095
>At1g49920.1 68414.m05598 zinc finger protein-related weak
similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
mays] GI:1857256; contains Pfam profiles PF03108: MuDR
family transposase, PF04434: SWIM zinc finger
Length = 785
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +3
Query: 123 SNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYCYKLW 302
SN L D Y+S LT D + A + L + Q+ +++D + +Y KL
Sbjct: 340 SNGLLVDWQYDS-LTHDPEHASFRGLFWAFSQSIQGFQHCRPLIVVDTKNLGGKYKMKLM 398
Query: 303 VGNGQDIVKKYFPLSF 350
+ + D +YFPL+F
Sbjct: 399 IASAFDATNQYFPLAF 414
>At5g66720.2 68418.m08411 5-azacytidine resistance protein -related
contains weak similarity to 5-azacytidine resistance
protein azr1 (Swiss-Prot:Q09189) [Schizosaccharomyces
pombe]
Length = 411
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 102 SADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNT 278
S D + + D LYN +TG S+VR L + +G + + +DK+R +
Sbjct: 324 SGDVIVAGTDGVYDNLYNEEITGVVVSSVRAGL--DPKGTAQKIAELARQRAVDKKRQS 380
>At5g66720.1 68418.m08410 5-azacytidine resistance protein -related
contains weak similarity to 5-azacytidine resistance
protein azr1 (Swiss-Prot:Q09189) [Schizosaccharomyces
pombe]
Length = 414
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 102 SADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNT 278
S D + + D LYN +TG S+VR L + +G + + +DK+R +
Sbjct: 327 SGDVIVAGTDGVYDNLYNEEITGVVVSSVRAGL--DPKGTAQKIAELARQRAVDKKRQS 383
>At5g10290.1 68418.m01194 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 613
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 93 VELSADSMSPSN---QDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIID 263
++L+ D+ S N Q K+Y +L + AV++ ++ES G + Q V + +
Sbjct: 283 LQLATDNFSEKNVLGQGGFGKVYKGVLPDNTKVAVKRLTDFESPGGDAAFQREVEMISVA 342
Query: 264 KRRNTM 281
RN +
Sbjct: 343 VHRNLL 348
>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
low similarity to SP|Q01593 Abscisic acid-insensitive
protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
protein homolog {Oryza sativa}; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 721
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -3
Query: 228 CCPGLGSRIPSSYVQHCRSHR*GCCCTVC---PRGLG*K-GSCC 109
C G I + +H R HR GC C +C P G+G K CC
Sbjct: 545 CTEVEGLLISPTTTKHPR-HRDGCTCIICIQSPSGIGPKHDRCC 587
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,712,752
Number of Sequences: 28952
Number of extensions: 254023
Number of successful extensions: 699
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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