Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g19r
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042...    31   0.90 
02_01_0388 + 2812235-2815003                                           28   6.4  
06_03_0539 + 21919115-21919313,21919474-21919582,21920595-219208...    28   8.4  
05_05_0387 + 24577448-24577638,24580375-24580767,24581078-245812...    28   8.4  

>02_03_0201 +
           16302797-16302799,16303949-16304084,16304163-16304250,
           16305531-16305683,16306647-16306809,16306906-16307090,
           16307164-16307337,16308055-16308200,16308369-16308492,
           16308608-16308788,16309302-16309371,16310155-16310196,
           16310276-16310394,16310474-16310672,16311442-16311573,
           16312435-16312538,16312641-16312820,16314000-16314090,
           16314100-16314139,16314225-16314364,16314500-16314660,
           16314897-16315020,16315104-16315255
          Length = 968

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 709 SIDRLRRAHKSFRKCIL 659
           +IDRLRRAHK + KC+L
Sbjct: 714 TIDRLRRAHKPYLKCLL 730


>02_01_0388 + 2812235-2815003
          Length = 922

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 152 VSFVLCRSTLLTELTKCHRVTNTSPYFFKIPD 247
           V  + CR+ L+T L +C R+ +    F +IP+
Sbjct: 319 VKSIACRTALITGLAQCGRIDDARILFEQIPE 350


>06_03_0539 +
           21919115-21919313,21919474-21919582,21920595-21920819,
           21921140-21921239,21921782-21921865,21922000-21922058,
           21922578-21922770
          Length = 322

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 347 LSRQDKNTAEISTIVSQTYKHEYLQKLIEQWK 252
           L R DKN   I  I  +TY  E   K I  W+
Sbjct: 263 LKRMDKNITSIRPIFEKTYGKESATKWIAYWR 294


>05_05_0387 +
           24577448-24577638,24580375-24580767,24581078-24581208,
           24581460-24581899
          Length = 384

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 540 SADDRIANSLTHTFKLFKKVPSGSTAHNHYANDG 641
           +++D +A+ L   FKL  K+ S  +A  H+ N+G
Sbjct: 279 TSEDEVADWLIERFKLKNKLLSDFSALGHFPNEG 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,464,770
Number of Sequences: 37544
Number of extensions: 283742
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)