Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g19r
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   29   2.8  
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)                  29   3.7  
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   29   3.7  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.7  
SB_49270| Best HMM Match : RVT_1 (HMM E-Value=1.4)                     28   8.6  
SB_847| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.6  

>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -3

Query: 368  NRETGILLSRQDKNTAEISTIVSQTYKHEY--LQKLI-EQW 255
            NR +G+LLSRQ       S  +S TY+  +  L+ L+ E+W
Sbjct: 968  NRSSGVLLSRQSTGHMNASIKISTTYETSFSTLRPLVNEEW 1008


>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
          Length = 310

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = +3

Query: 273 LKIFMFICLRYYCRYFCCIFVLAAKQYPCFSISLFGLTITSFL*YFFLKLYRSISLCSTT 452
           L++  F+CL Y C     ++ L    + C + +    ++      FF+ L  + S  S  
Sbjct: 23  LRVLFFVCLNYNCSR-ASVYDLRVLFFVCLNYNCSRASVYDLRVLFFVCLNYNYSRVSVI 81

Query: 453 TLYLILFVFL 482
             Y  LFV +
Sbjct: 82  YAYCSLFVLI 91


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = +3

Query: 273 LKIFMFICLRYYCRYFCCIFVLAAKQYPCFSISLFGLTITSFL*YFFLKLYRSISLCSTT 452
           L++  F+CL Y C     ++ L    + C + +    ++      FF+ L  + S  S  
Sbjct: 23  LRVLFFVCLNYNCSR-ASVYDLRVLFFVCLNYNCSRASVYDLRVLFFVCLNYNYSRVSVI 81

Query: 453 TLYLILFVFL 482
             Y  LFV +
Sbjct: 82  YAYCSLFVLI 91


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
 Frame = +3

Query: 261  FY*LLKIFMF---ICLRYYCRYFCCIFVLAAK-QYPCF-SISLFGLTITSFL*YFFLKLY 425
            F  L  IF+F   + LRY C    CIF L+   +Y C  +I +F + ++  L Y +L   
Sbjct: 1898 FLYLCAIFVFALSVSLRYICLCAFCIFALSVSLRYLCLCAICIFAVFVS--LRYLYLCGI 1955

Query: 426  RSISL-CSTTTLYLILF 473
            R  +L  S   LYL  F
Sbjct: 1956 RIFALSVSLRFLYLCAF 1972



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +3

Query: 285  MFICLRYYCRYFCCIFVLAAK---QYPCFSISLFGLTITSFL*YFFLKLYRSISL-CSTT 452
            +F+ L Y C    CIF L+      Y C +I +F L+++  L Y +L  +   +L  S  
Sbjct: 1841 LFVSLSYLCLCAICIFALSVSLRYLYLC-AICIFALSVS--LRYLYLCAFCIFALYLSLR 1897

Query: 453  TLYL-ILFVF 479
             LYL  +FVF
Sbjct: 1898 FLYLCAIFVF 1907



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 291  ICLRYYCRYFCCIFVLAAK---QYPCFSISLFGLTITSFL*YFFLKLYRSISLCSTTTLY 461
            + LRY C Y  CIF L+      Y C +I +F L+++  L + +L      +L  +  LY
Sbjct: 1996 VSLRYICLYAICIFALSVSLRFLYLC-AICIFALSVS--LRFLYLCAIFVFALSLSLRLY 2052

Query: 462  L 464
            +
Sbjct: 2053 I 2053


>SB_49270| Best HMM Match : RVT_1 (HMM E-Value=1.4)
          Length = 594

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = -3

Query: 347 LSRQDKNTAEIST-IVSQTYK-HEYLQKLIEQWKNSLEF*RSRG*CWLHDDT 198
           ++R+D NT+E    +   ++K  +YLQ+LIE+ ++ L   R +   +L+ DT
Sbjct: 88  VTRKDNNTSETYVGLTENSFKTSDYLQRLIEKTEHFLRRMRWKAHFFLNTDT 139


>SB_847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1058

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = -3

Query: 347 LSRQDKNTAEIST-IVSQTYK-HEYLQKLIEQWKNSLEF*RSRG*CWLHDDT 198
           ++R+D NT+E    +   ++K  +YLQ+LIE+ ++ L   R +   +L+ DT
Sbjct: 189 VTRKDNNTSETYVGLTENSFKTSDYLQRLIEKTEHFLRRMRWKAHFFLNTDT 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,558,283
Number of Sequences: 59808
Number of extensions: 347867
Number of successful extensions: 814
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)