Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g19r
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72511-4|CAA96660.1|  395|Caenorhabditis elegans Hypothetical pr...    31   0.81 
AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    30   1.4  
Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81088-7|CAB03129.2|  337|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z79757-7|CAF31478.1|  314|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF024501-6|AAN65317.1|  321|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z72511-4|CAA96660.1|  395|Caenorhabditis elegans Hypothetical
           protein F55A11.7 protein.
          Length = 395

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 282 FMFICLRYYCRYFCCIFVLAAKQYPCFSISLFGLTITSFL*YFFLKLYRSISLCSTTTLY 461
           F+  C RYY ++ C +F+ A      F +++FG+     L +     + +I L      +
Sbjct: 221 FVDFCRRYYIQHLCYVFLFA------FVLTMFGIAFHGSLIFHETVEFATIVLSVLAFFF 274

Query: 462 LILFV 476
            +LFV
Sbjct: 275 FVLFV 279


>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +3

Query: 366 ISLFGLTITSFL*YFFLKLYRS--ISLCSTTTL--YLILFVFL 482
           +S  G+ I  ++ YFFLKL ++    LCS+ T+   +ILF +L
Sbjct: 18  VSFCGILINFYMFYFFLKLQKTSFYVLCSSKTISNSIILFAYL 60


>Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical
           protein F43A11.4 protein.
          Length = 323

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +3

Query: 306 YCRYFCCIFVLAAKQYPCFSISLFGLTITSFL*YFFLKLYRSISLCSTTTLYLILFVFL* 485
           YC +   I    A   P F  +LFG+ IT F+    + +YR + +      Y+ L  F  
Sbjct: 101 YCGFLIAINRFCAMYIPMFYSTLFGVKIT-FILTTLIFVYRIVKIIMELIHYIPLQCFSS 159

Query: 486 FRTVD*SFS 512
           F + D S++
Sbjct: 160 FSSYDISWA 168


>Z81088-7|CAB03129.2|  337|Caenorhabditis elegans Hypothetical
           protein F53F1.7 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
 Frame = +3

Query: 306 YCRYFCCIFVLAAKQ--YPCFSISLFGLTITSFL*YFFLKLYRSISLCSTTTLYLILFVF 479
           +CR     F L  ++  YP ++ ++  + ++  +   FL L R     +    Y   FV 
Sbjct: 119 FCRVCAVCFPLFYQKLSYPKYTYTMQAIQLSGAVASVFLLLPREYKYVNENGGYYSAFVN 178

Query: 480 L*FRTVD*SF-SLLEYVDCWASADDRIANSLTHTFKLFKKVPSGSTA 617
             FR    +F ++LE +   A   + +   +T+ FKL KKV S  T+
Sbjct: 179 NEFRKPFFNFVAVLEILFVLAIVVNNLVTYITYRFKLKKKVLSRRTS 225


>Z79757-7|CAF31478.1|  314|Caenorhabditis elegans Hypothetical
           protein F55B12.9 protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = +3

Query: 357 CFSISLFGLTITSFL*YFFLKL------YRSISLCSTTTLYLILFVFL 482
           C  ISLFG  +  FL Y FL+       ++ I L  T   ++I F FL
Sbjct: 13  CLIISLFGSAVNFFLFYKFLRRDGKPNGFQKICLVKTLPNFVICFAFL 60


>AF024501-6|AAN65317.1|  321|Caenorhabditis elegans Hypothetical
           protein F39E9.11 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 371 RNRETGILLSRQDKNTAEISTIVSQTYKHEYLQKLIE 261
           RN+ +G+  + Q++N   + T+VS T   + L KL+E
Sbjct: 90  RNQVSGMFQTGQNQNFTTVHTLVSLTEHCQTLTKLVE 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,921,024
Number of Sequences: 27780
Number of extensions: 272182
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)