Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g19r
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17830.1 68418.m02090 hypothetical protein contains Pfam doma...    32   0.43 
At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase, puta...    29   3.0  
At1g31840.1 68414.m03912 pentatricopeptide (PPR) repeat-containi...    28   5.3  
At1g78090.1 68414.m09100 trehalose-6-phosphate phosphatase (TPPB...    28   7.0  
At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak ...    27   9.3  

>At5g17830.1 68418.m02090 hypothetical protein contains Pfam domain,
           PF04515: Protein of unknown function, DUF580
          Length = 474

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 280 YSCLYVCDTIVDISAVFLSWRLSSIPVSLFLSLVSQSHP 396
           ++C +VC+    + A F    L +I V LFL L+ +S+P
Sbjct: 109 WNCFFVCNIRATVKATFWFTPLFTISVGLFLILLDKSNP 147


>At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 349

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 377 KERNRETGILLSRQDKNTAEISTIVSQTYKHEYLQKLIEQWK 252
           +ER +  GIL+S+  K T+   ++       E+LQ+L+E WK
Sbjct: 303 RERRQGLGILVSKFPKETSASYSLQEPDEVMEFLQRLVE-WK 343


>At1g31840.1 68414.m03912 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR domains: Pfam profile:
           PF01535: PPR repeat
          Length = 690

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 128 LQQGNK*SVSFVLCRSTLLTELTKCHRVTNTSPYF 232
           L Q NK S    +C + ++  L KCHR+ + S +F
Sbjct: 591 LMQRNKISADIAVC-NVVIHLLFKCHRIEDASKFF 624


>At1g78090.1 68414.m09100 trehalose-6-phosphate phosphatase (TPPB)
           identical to trehalose-6-phosphate phosphatase (AtTPPB)
           GI:2944180 [Arabidopsis thaliana]
          Length = 374

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = -3

Query: 377 KERNRETGILLSRQDKNTAEISTIVSQTYKHEYLQKLIEQWK 252
           +ER +  GIL+S+  K+T    ++   +  +++L++L+E WK
Sbjct: 327 RERGQGFGILVSKVPKDTNASYSLQDPSQVNKFLERLVE-WK 367


>At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak
           similarity to long chain polyunsaturated fatty acid
           elongation enzyme [Isochrysis galbana] GI:17226123;
           contains Pfam profile PF01151: GNS1/SUR4 family
          Length = 289

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 336 LAAKQYPCFSISLFGLTITSFL*YFFLKLYRSISLCSTTTLYLILF 473
           LA  Q  C S+  F    TSFL   F + Y+ +++ STT +Y +++
Sbjct: 157 LAVSQLFCNSVMAF----TSFLWLEFSQSYQILAILSTTLVYSVVY 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,996,330
Number of Sequences: 28952
Number of extensions: 247116
Number of successful extensions: 590
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)