Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g18r
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    26   0.37 
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    24   1.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.6  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   6.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   6.0  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
 Frame = -3

Query: 713 EQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQL------- 555
           + L++  V+  Y   + K      +  G  +   + ++ E+G R  + FA +        
Sbjct: 583 KDLFLEAVLLRYPD-LNKIFYVQTDSSGYGLGAELYQIQEDGSRGVIAFASRSLRGPELN 641

Query: 554 WTKDGKEIVKSYFPI-QFRVIFTEQTVKLINKRDHHALKLIDQ 429
           +T   KE++   F + +FR+    Q  K+I + DH ALK + +
Sbjct: 642 YTTTEKELLGVIFALHKFRIYI--QVTKIIIRTDHQALKFLSR 682


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 8   SVEPFTTTLSRGRCTMQKVGDNRKLLRCAPRLHGLRWRPYLHQ 136
           S+ P     S  +CT Q++   +K+L    + +   W   LHQ
Sbjct: 67  SLAPLVLRGSCPQCTPQEMKQIQKVLAFVQKNYPKEWNKILHQ 109


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 353  VLENNRVYFKIMSTEDKQYLKLDNTK 276
            ++E   VY+K +ST+DK  +K  + K
Sbjct: 1230 IVEYYTVYYKPVSTDDKTEVKPTSQK 1255


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 380 CWFCLWSHRMQFCCGFV 430
           C F +++  + FCC F+
Sbjct: 171 CAFIIFTMHLLFCCAFI 187


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -3

Query: 578 TMDFAYQLWTKDG---KEIVKS--YFPIQFRVIFTEQT 480
           ++D+A + WTK G    +IV    +F   F + FT +T
Sbjct: 395 SVDYAVKFWTKKGFPKSKIVLGVPFFGRSFTLQFTNET 432


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 373 TFLLVLSLESPNAILLWFCWSINLRA*WSLLFMSLTV 483
           T+L+    E  +  +LW C S N      +L +S TV
Sbjct: 242 TYLIWTIYEMYHLAILWSCTSTNCPRFLIMLALSYTV 278


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 391 TKPARKSPGSLPPCWKTTEYTSRSCP 314
           T PA   PG LP  W+     S   P
Sbjct: 52  TNPAFFHPGLLPLAWQANSPPSPPAP 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,230
Number of Sequences: 336
Number of extensions: 4120
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)