BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10g18r (751 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00 SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5) 30 2.3 SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3 SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 30 2.3 SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1) 30 2.3 SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13) 29 3.0 SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0 SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19) 29 4.0 SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05) 29 4.0 SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1) 29 5.3 SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) 28 7.0 SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9) 28 7.0 SB_28365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3 SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6) 28 9.3 SB_12810| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3 >SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 358 Score = 31.1 bits (67), Expect = 1.00 Identities = 21/64 (32%), Positives = 30/64 (46%) Frame = -1 Query: 406 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 227 S++P + R S GSL P +T+ TSRS P + + + + ST P TP Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRSTPRSRSRS------RARTPSTPSTPSTPSTP 232 Query: 226 SNTT 215 S T Sbjct: 233 STIT 236 >SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5) Length = 260 Score = 29.9 bits (64), Expect = 2.3 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +1 Query: 559 W*AKSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 693 W + +F++ SI + A+L F F H+ AV+YS T Sbjct: 127 WQSSRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171 >SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1021 Score = 29.9 bits (64), Expect = 2.3 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = -3 Query: 680 YETAIAKCSEYLKEK--KGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFP 513 Y + I K E+ KEK KG+ K R E GKR A +D E +K +FP Sbjct: 261 YPSLIDKLQEHEKEKELKGKRKKSKTSRSPEKGKREEEKDALLKQEEDEIERMKQFFP 318 >SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) Length = 458 Score = 29.9 bits (64), Expect = 2.3 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP K T Y R CPP T T Sbjct: 136 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 169 Score = 29.9 bits (64), Expect = 2.3 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP K T Y R CPP T T Sbjct: 150 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 183 Score = 29.9 bits (64), Expect = 2.3 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP K T Y R CPP T T Sbjct: 164 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 197 Score = 29.9 bits (64), Expect = 2.3 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP K T Y R CPP T T Sbjct: 178 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 211 Score = 29.1 bits (62), Expect = 4.0 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP K T Y R CPP T T Sbjct: 220 PLTKCTYYRKRRCPPLTKCTNYRKRRCPPLTRCT 253 Score = 29.1 bits (62), Expect = 4.0 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP + T Y R CPP T T Sbjct: 290 PLTKRTNYRKKRYPPLTRCTNYRKRRCPPLTRCT 323 Score = 28.7 bits (61), Expect = 5.3 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P T+ PP K T Y R CPP T T Sbjct: 122 PLTRCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 155 Score = 28.7 bits (61), Expect = 5.3 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP + T Y R CPP T T Sbjct: 192 PLTKCTNYRKRRCPPLTRCTNYRKRRCPPLTKCT 225 Score = 28.7 bits (61), Expect = 5.3 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP + T Y R CPP T T Sbjct: 234 PLTKCTNYRKRRCPPLTRCTNYLKRRCPPLTRCT 267 Score = 28.3 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 11/21 (52%) Frame = -1 Query: 358 PPCWKTTEYTSRSCPPKTNST 296 PP K T Y R CPP T T Sbjct: 275 PPLTKCTNYLKRRCPPLTKRT 295 Score = 28.3 bits (60), Expect = 7.0 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP K T Y R CPP T T Sbjct: 416 PLTKGNYYRKRRCPPLTKGTNYRKRRCPPLTRCT 449 Score = 27.9 bits (59), Expect = 9.3 Identities = 14/37 (37%), Positives = 14/37 (37%) Frame = -1 Query: 415 KLHSVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 305 K P TK PP K T Y R CPP T Sbjct: 46 KTRRCNPLTKGNYYRKRRCPPLTKCTNYRKRRCPPLT 82 Score = 27.9 bits (59), Expect = 9.3 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P T+ PP K T Y R CPP T T Sbjct: 206 PLTRCTNYRKRRCPPLTKCTYYRKRRCPPLTKCT 239 >SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1) Length = 259 Score = 29.9 bits (64), Expect = 2.3 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP K T Y R CPP T T Sbjct: 189 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 222 Score = 29.5 bits (63), Expect = 3.0 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP K T Y R CPP T T Sbjct: 147 PLTKCTNYLKRRCPPLTKCTNYRKRRCPPLTRCT 180 Score = 28.7 bits (61), Expect = 5.3 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP + T Y R CPP T T Sbjct: 35 PLTKCTNYRKRRCPPLTRCTNYRKRRCPPLTRCT 68 Score = 28.7 bits (61), Expect = 5.3 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP + T Y R CPP T T Sbjct: 161 PLTKCTNYRKRRCPPLTRCTNYRKRRCPPLTKCT 194 Score = 28.7 bits (61), Expect = 5.3 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P T+ PP K T Y R CPP T T Sbjct: 175 PLTRCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 208 Score = 28.3 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 11/21 (52%) Frame = -1 Query: 358 PPCWKTTEYTSRSCPPKTNST 296 PP K T Y R CPP T T Sbjct: 34 PPLTKCTNYRKRRCPPLTRCT 54 Score = 28.3 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 11/21 (52%) Frame = -1 Query: 358 PPCWKTTEYTSRSCPPKTNST 296 PP K T Y R CPP T T Sbjct: 146 PPLTKCTNYLKRRCPPLTKCT 166 >SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13) Length = 618 Score = 29.5 bits (63), Expect = 3.0 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%) Frame = +1 Query: 271 EPFVLSSFRYCLSSVDMILKYTL-LFSN----TGVNFQE--TFLLVLSLESPNAILLWFC 429 +P S+ C +I Y + L SN TGV F E + L L S +++ +++ Sbjct: 485 KPVDTLSYLVCFGCPPVISSYNIHLGSNEEQTTGVQFDEFAVYCKPLELASVDSMYIFYK 544 Query: 430 WSINLRA*WSLLFMSLTVCSVKITLNWMGK*DL 528 ++ LRA ++LLF T +L + G DL Sbjct: 545 GALGLRANYTLLFPDKTWSYYWTSLEYSGLLDL 577 >SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 321 Score = 29.1 bits (62), Expect = 4.0 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = +1 Query: 253 MIRSSLEPFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLV 387 MI + EP +L+ +Y ++S+ +K+T +S T +NF +T++ V Sbjct: 106 MIWTHDEPSLLNFLQY-INSIHPTIKFTHEYSPTRINFLDTYIHV 149 >SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19) Length = 291 Score = 29.1 bits (62), Expect = 4.0 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = -1 Query: 403 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 ++P TK PP + T Y R CPP T T Sbjct: 1 MSPLTKRTYYRKKRYPPLTRCTNYRKRRCPPLTRCT 36 Score = 28.7 bits (61), Expect = 5.3 Identities = 13/34 (38%), Positives = 14/34 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST 296 P TK PP + T Y R CPP T T Sbjct: 226 PLTKCTNYRKRRCPPLTRCTNYLKRRCPPLTKCT 259 Score = 28.3 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 11/21 (52%) Frame = -1 Query: 358 PPCWKTTEYTSRSCPPKTNST 296 PP K T Y R CPP T T Sbjct: 225 PPLTKCTNYRKRRCPPLTRCT 245 Score = 28.3 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 11/21 (52%) Frame = -1 Query: 358 PPCWKTTEYTSRSCPPKTNST 296 PP K T Y R CPP T T Sbjct: 253 PPLTKCTNYLKRRCPPLTKCT 273 Score = 27.9 bits (59), Expect = 9.3 Identities = 13/31 (41%), Positives = 13/31 (41%) Frame = -1 Query: 397 PKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 305 P TK PP K T Y R CPP T Sbjct: 254 PLTKCTNYLKRRCPPLTKCTNYRKRRCPPLT 284 >SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05) Length = 435 Score = 29.1 bits (62), Expect = 4.0 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%) Frame = -3 Query: 470 INKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST-EDKQYL 294 +NK +H + D + IA+G + + ++ + PV E Y + T ED Sbjct: 22 VNKYEHPIKSIEDLADQQGIAYGTAPGQLAEMLKTASLPVYEKLWRYIETHGTLEDNATY 81 Query: 293 KLDNTKGSSDDRIIYGDSTAD 231 +D + D I+ + D Sbjct: 82 AIDKVRSRDDYAFIWDSAVLD 102 >SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1) Length = 432 Score = 28.7 bits (61), Expect = 5.3 Identities = 27/117 (23%), Positives = 51/117 (43%) Frame = -2 Query: 642 GKEGRGYQGSREASDRKRQEEHHGLRLPVMDKGWKGNRQILLPHPV*SDLHRADCQAHKQ 463 G+ R G RE SDR+++ E R D+G G+R+ R D AH Sbjct: 151 GESSRIRSGDREKSDREKEREKERRRRRHEDEG-SGDRR----------RERRDKDAHDP 199 Query: 462 KGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSILQDHVHRRQTVPE 292 + P R + D K ++ ++ ++S L+ R+ +++ L + + + + E Sbjct: 200 EDPKRREKDDKKKSRERSKG--DEEHTKDSKLDEEDRIRRREKELLETLKQEEEAVE 254 >SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 673 Score = 28.3 bits (60), Expect = 7.0 Identities = 14/63 (22%), Positives = 28/63 (44%) Frame = -2 Query: 498 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSILQDH 319 DLH + Q +Q G + + + QQ ++ Q+Q QQ+ L + + + L Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQLQKKQQKQSSMEEKLSSE 617 Query: 318 VHR 310 + + Sbjct: 618 IEK 620 >SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1626 Score = 28.3 bits (60), Expect = 7.0 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Frame = -1 Query: 409 HSVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITR-KVLVMTVSSTVIA-P 236 H + P ++ PP W + PP+ N+ S KV++ T+SS+ P Sbjct: 391 HMIQPSQAKTIQTASKTPPVWVPLSQLNYQIPPQGNTAASVAPGCKVVMSTLSSSQSQNP 450 Query: 235 LTPSNTTGT 209 +T S + T Sbjct: 451 VTTSTSVAT 459 >SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1278 Score = 28.3 bits (60), Expect = 7.0 Identities = 19/45 (42%), Positives = 22/45 (48%) Frame = -2 Query: 420 QQNCIR*LQRQNQQESLLEVYPRVGKQQSILQDHVHRRQTVPEAR 286 QQ C LQR +S LE YP GK L +H RQ V + R Sbjct: 925 QQMCASDLQRLPYCQSQLEKYPGQGKLVPCLLEH---RQNVTDTR 966 >SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 975 Score = 28.3 bits (60), Expect = 7.0 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 650 YLKEKKGEVIKEAVKRLIENGKRNTMDFAY 561 + +E+ GE EA KRLI+ GK+ M Y Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIMFLLY 705 >SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) Length = 734 Score = 28.3 bits (60), Expect = 7.0 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = -3 Query: 362 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 243 FT + E K MS E+KQ K DN KG S+ + GD Sbjct: 204 FTEMEEKIDEKVKEMSLEEKQPQKKDNQKGKSEKKKGKGD 243 >SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3934 Score = 28.3 bits (60), Expect = 7.0 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = -3 Query: 461 RDHHALKLIDQQNHNK-IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLD 285 R HH+ + + K + SKD T+ VS + + E ++ M+T +K +K+ Sbjct: 418 RRHHSFGGLPLEYREKRLRESSSKDNTNTSVSLEIKKIREAQKLIDAAMATSEKS-IKVG 476 Query: 284 NTKGSSDDR 258 +KG D + Sbjct: 477 ESKGLWDSK 485 >SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9) Length = 749 Score = 28.3 bits (60), Expect = 7.0 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Frame = -1 Query: 409 HSVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITR-KVLVMTVSSTVIA-P 236 H + P ++ PP W + PP+ N+ S KV++ T+SS+ P Sbjct: 371 HMIQPSQAKTIQTASKTPPVWVPLSQLNYQIPPQGNTAASVAPGCKVVMSTLSSSQSQNP 430 Query: 235 LTPSNTTGT 209 +T S + T Sbjct: 431 VTTSTSVAT 439 >SB_28365| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 233 Score = 27.9 bits (59), Expect = 9.3 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = +1 Query: 184 SLSYMEGSRYQWCLKVSAVLSP*MIRSSLEPFVLSSFRYCLSSVDMILKYTLLFSNTGVN 363 S+S S+Y WC K L P I +S+ +S + +C +L + S TG N Sbjct: 73 SISGANNSQYYWCQKQPVFLVP--ISASITGANISQYYWC--QYQAVLLVPISASITGAN 128 Query: 364 FQETF 378 + + Sbjct: 129 ISQYY 133 >SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6) Length = 261 Score = 27.9 bits (59), Expect = 9.3 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = -1 Query: 400 TPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTN 302 +PKT P WKT+ T R PKT+ Sbjct: 41 SPKTSPKTSPKTGRKTSWKTSTKTGRKTSPKTS 73 >SB_12810| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 546 Score = 27.9 bits (59), Expect = 9.3 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Frame = -3 Query: 680 YETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQ---LWTKDGKEIVKSYFPI 510 Y + KC Y+ + +G ++ + + KR M + LWT ++I K Y Sbjct: 456 YPAGLTKCLSYVADDRGRALRLVLTKT--EAKRIPMLNRPEEGFLWTSTQQQITKGYESA 513 Query: 509 QFRVIFTEQTVKLI 468 R+ + T +++ Sbjct: 514 HIRLARNDSTTRIV 527 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,185,937 Number of Sequences: 59808 Number of extensions: 525763 Number of successful extensions: 1785 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1555 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1784 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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