Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g18f
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    31   0.17 
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    29   0.53 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.2  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   1.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   3.7  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   3.7  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   4.9  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   4.9  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   4.9  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   6.5  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   6.5  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   8.6  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   8.6  

>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 550 QVLFVFGGHDLEVYSVVFQHGGK 482
           +V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 167 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 310
           ET   K S   K +K  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 134 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 250
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 570 PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 421
           PF+L++ R C    D  +KY L+ +     F  + L+V +L    A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 447 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP 608
           P T  +     S P P   T+  TS S PP  NST + +T  V   + SST   P
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP 317



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 441 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSST 596
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T +ST
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST 352



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 441 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSST 596
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T +ST
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST 406



 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 441 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP 608
           +TP   P   S  S+P P   T+   + S P  T ST  + +  +     S+T + P
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTP 303


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 26/96 (27%), Positives = 42/96 (43%)
 Frame = -3

Query: 592  DDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLL 413
            D   + + +R+     +   GG   E YS + Q   KL           +   N  VVLL
Sbjct: 1233 DTERVLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKE-----LAQRLNTFNAHVVLL 1287

Query: 412  VDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 305
             D + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1288 QD-IHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 523 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 422
           DLE   +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 371 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 463
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 604 AITVDDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGK 482
           A  V+D  I R + + + +V  +  GH+ E+YS+ F   GK
Sbjct: 350 ATGVEDQQI-RIWDIAQKRVYRLLTGHEQEIYSLDFSKDGK 389


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -1

Query: 270 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 91
           M F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 90  EASAHTARTKA 58
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = -1

Query: 228 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 67
           +LI SP  S   S ++   V  S       M  L+Y+ S + +S+  A + L+  + T  
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343

Query: 66  TKANKVSLI 40
            + N VSLI
Sbjct: 344 FQENVVSLI 352


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +2

Query: 353 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 532
           +  T K +N+++H+ L L     ++   FG S D +S ++    +   +N   YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201

Query: 533 EDKQYLK 553
           +   ++K
Sbjct: 202 DGFDFIK 208


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 574 RTFRVIELQVLFVFGGHDLEVYSVVFQ 494
           R +RV   + L+   GH L +YSV+++
Sbjct: 530 RIWRVSTGECLYHLRGHSLRIYSVLYE 556


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 228 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSV 112
           SL+ S FFS  YSE   +   +  +   IYS S S  S+
Sbjct: 6   SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,355
Number of Sequences: 5004
Number of extensions: 55396
Number of successful extensions: 237
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)