Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g18f
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 0.72
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 2.2
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 29 2.2
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 29 2.9
05_03_0618 - 16262826-16263097,16263111-16263183 28 5.1
05_03_0469 + 14439472-14440905 28 5.1
03_02_0950 + 12661008-12662312,12662403-12662576 28 5.1
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 5.1
11_06_0198 - 21158350-21159528 28 6.7
08_01_0692 + 6121443-6122266,6122812-6124798 28 6.7
04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879... 28 6.7
01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797... 28 6.7
04_03_1035 - 21887562-21890030 27 8.9
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 347 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 451
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 415 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 329
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Frame = -3
Query: 283 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 137
V E G+P+AV D + D + +FL+ G L N D+ I
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764
Query: 136 LLCQYVISSWCKCGVRSQRTHGEDEGK 56
L + + C+ V S R HG +G+
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQ 790
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 134 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 304
+LY+ +++ G Y+ A+ S + G +KE K L+E+ T++ +L T G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550
Query: 305 KEIVK 319
+ +
Sbjct: 551 DPMTR 555
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 115 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 29
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>05_03_0469 + 14439472-14440905
Length = 477
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 441 VTPKTKPARKSPGS--LPPCWKTTEYTSRSCPP 533
+T T+ AR PG+ +PP W+ T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 119 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 220
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 431 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 565
I F D K+K K K +EN+ + F +M+ D QYL +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397
>11_06_0198 - 21158350-21159528
Length = 392
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 145 ECRHW*IRDRYRQML*ISEGKEGRGYQGSREASDRKRQEEHH 270
+CR W R + + + E +E Y G RE RKR + HH
Sbjct: 275 DCRQW--RRQEEEEAAVDE-EEDHNYGGEREQHCRKRCQHHH 313
>08_01_0692 + 6121443-6122266,6122812-6124798
Length = 936
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 418 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 305
++V GVM P + +L +L+G+++ KL G + FL
Sbjct: 7 IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44
>04_04_1113 -
30986757-30986780,30986781-30987273,30987437-30987959,
30988361-30988615,30988812-30988926,30989026-30989078,
30989213-30989265,30989419-30989473,30989549-30989599,
30989776-30990024,30990122-30990350,30990994-30991305
Length = 803
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -1
Query: 237 FTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKA 58
F +S+ + F+ +LA ++ MTT I+ C S LG L+ HT+R
Sbjct: 367 FFSSIPSGVFWPVFLIANLAALIASRTMTTAIFQC-LKQSIALGCFPRLKI-IHTSRKFM 424
Query: 57 NKVSLILAQWLSL 19
K+ + + W L
Sbjct: 425 AKIYIPVVNWFLL 437
>01_07_0312 +
42677752-42678561,42678701-42678910,42679597-42679704,
42679915-42680010,42680090-42680182,42680276-42680386,
42680482-42680514,42680592-42680642,42680960-42681037,
42681145-42681165
Length = 536
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 180 AIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANK 52
A+ + S M T+ + C+AS +S + ALE A ++ NK
Sbjct: 465 ALENNCSHMETVFHVCTASVTSEIAEDKALELIAKAVESRMNK 507
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 143 MSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNT 268
MS V+G E A+A C EY + G + A+ R +G T
Sbjct: 781 MSEVVGVLERAVAACDEYEEGGAGAGGEPALSRSCTDGSTAT 822
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,952,190
Number of Sequences: 37544
Number of extensions: 366312
Number of successful extensions: 1304
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -