Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g17r
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.4  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 669 RGINLPYAYGELQFLGDTWRTGELYXILFXG 761
           +G+N+PY     Q  G TW   ++  +   G
Sbjct: 890 QGMNVPYGMQRGQSGGQTWSNSQVQGVAVPG 920


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 571 YNALNNGPFKDIKTIIVINISTNIM 497
           YN  NN  +KD   +  +N  T+++
Sbjct: 304 YNKFNNNVYKDALIVCTVNSCTSML 328


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 571 YNALNNGPFKDIKTIIVINISTNIM 497
           YN  NN  +KD   +  +N  T+++
Sbjct: 357 YNKFNNNVYKDALIVCTVNSCTSML 381


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 739 NSPVRHVSPKNCNSPYA*G 683
           NS   +VSP  C SP+  G
Sbjct: 5   NSMYNNVSPLQCTSPFLGG 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,625
Number of Sequences: 438
Number of extensions: 3388
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)