Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g17f
(601 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 1.7
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 23 3.0
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 21 7.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.2
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.4 bits (48), Expect = 1.7
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -1
Query: 106 SLDASVEYCAKTYLRKVLS 50
++D + ++C KT +RKV+S
Sbjct: 195 NIDGAEDHCNKTAVRKVIS 213
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 22.6 bits (46), Expect = 3.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 328 GAKIAP*ISYLKLPKICLYGTSM 396
GA +A + LK+P+ CL+G S+
Sbjct: 524 GAVVAGIVG-LKMPRYCLFGDSV 545
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 243 LSRYNDLPLPA 275
LS YND P+PA
Sbjct: 151 LSDYNDKPIPA 161
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -1
Query: 361 LGMKFKVRSLHLRCSPEPSIQM 296
+GM K ++ +C PEP + +
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDV 184
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -1
Query: 361 LGMKFKVRSLHLRCSPEPSIQM 296
+GM K ++ +C PEP + +
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDV 184
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -1
Query: 361 LGMKFKVRSLHLRCSPEPSIQM 296
+GM K ++ +C PEP + +
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDV 184
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -1
Query: 361 LGMKFKVRSLHLRCSPEPSIQM 296
+GM K ++ +C PEP + +
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDV 184
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -1
Query: 361 LGMKFKVRSLHLRCSPEPSIQM 296
+GM K ++ +C PEP + +
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDV 184
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -1
Query: 361 LGMKFKVRSLHLRCSPEPSIQM 296
+GM K ++ +C PEP + +
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDV 184
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -1
Query: 361 LGMKFKVRSLHLRCSPEPSIQM 296
+GM K ++ +C PEP + +
Sbjct: 231 IGMPGKKNTITYQCCPEPYVDV 252
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -1
Query: 361 LGMKFKVRSLHLRCSPEPSIQM 296
+GM K ++ +C PEP + +
Sbjct: 231 IGMPGKKNTITYQCCPEPYVDV 252
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,926
Number of Sequences: 438
Number of extensions: 3970
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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